Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG266_RS41300 Genome accession   NZ_CP107799
Coordinates   9301017..9301682 (+) Length   221 a.a.
NCBI ID   WP_329549188.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 9296017..9306682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS41280 (OG266_41240) - 9296949..9298154 (+) 1206 WP_266469566.1 geranylgeranyl reductase family protein -
  OG266_RS41285 (OG266_41245) - 9298202..9298651 (-) 450 WP_329549184.1 nitroreductase family deazaflavin-dependent oxidoreductase -
  OG266_RS41290 (OG266_41250) - 9298797..9299534 (+) 738 WP_371552025.1 TetR/AcrR family transcriptional regulator -
  OG266_RS41295 (OG266_41255) - 9299782..9301020 (+) 1239 WP_371552026.1 sensor histidine kinase -
  OG266_RS41300 (OG266_41260) vraR 9301017..9301682 (+) 666 WP_329549188.1 response regulator transcription factor Regulator
  OG266_RS41305 (OG266_41265) - 9301643..9301990 (-) 348 WP_371552027.1 DUF6332 family protein -
  OG266_RS41310 (OG266_41270) - 9302063..9303559 (-) 1497 WP_371552028.1 MFS transporter -
  OG266_RS41315 (OG266_41275) - 9303645..9304040 (+) 396 WP_329549191.1 MarR family transcriptional regulator -
  OG266_RS41320 (OG266_41280) - 9304162..9304923 (-) 762 WP_371552029.1 CbtA family protein -
  OG266_RS41325 (OG266_41285) - 9304939..9305160 (-) 222 WP_266469582.1 CbtB-domain containing protein -
  OG266_RS41330 (OG266_41290) - 9305409..9305993 (+) 585 WP_371552030.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24175.87 Da        Isoelectric Point: 4.5965

>NTDB_id=646482 OG266_RS41300 WP_329549188.1 9301017..9301682(+) (vraR) [Streptomyces sp. NBC_00554 strain NBC 00554]
MIRVLLADDQLLVRAGFKALLDAQSDIEVAGEAADGEEALRQVRELRPDVVLMDIRMPRLDGLAATRRITDDTDLEDVKV
VMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLRAVRAVVGGDALLSPGVTRRLIAEFAARSKEPAEVASLAELTERER
EVMALVGIGLSNDEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=646482 OG266_RS41300 WP_329549188.1 9301017..9301682(+) (vraR) [Streptomyces sp. NBC_00554 strain NBC 00554]
GTGATCCGCGTACTGCTCGCCGACGACCAGTTGCTGGTGAGGGCAGGCTTCAAGGCGCTGCTCGACGCGCAGTCGGACAT
CGAGGTGGCCGGGGAGGCCGCCGACGGCGAGGAGGCGCTGCGCCAGGTACGCGAACTGCGCCCCGACGTCGTCCTGATGG
ACATCCGCATGCCCCGGCTCGACGGCCTCGCCGCGACCCGCCGCATCACCGACGACACCGACCTCGAGGACGTCAAGGTG
GTCATGCTCACCACCTTCGAGCTGGACGAGTACGTCTTCGAGGCGATCCGCTCCGGTGCCTCCGGCTTCCTGGTCAAGGA
CACCGAGCCGGAGGAACTCCTGCGCGCGGTACGGGCGGTGGTCGGGGGCGACGCGCTGCTCTCGCCGGGTGTGACGCGCC
GGCTGATCGCCGAGTTCGCGGCCCGCTCCAAGGAGCCCGCGGAAGTCGCGTCCCTCGCCGAACTCACCGAGCGGGAACGG
GAGGTGATGGCCTTGGTCGGCATCGGCCTGTCCAACGACGAGATCGCCCGGCGCCTGGTCGTCAGCCCGCTCACGGCGAA
GACGCATGTCAGCCGGACCATGGTGAAGCTGGGCGCCCGTGACCGGGCCCAACTGGTCGTGCTGGCCTATGAGTCGGGCT
TGGTGCGGCCGGGCTGGCTGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.535

97.285

0.385
  degU Bacillus subtilis subsp. subtilis str. 168

36

100

0.367