Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG266_RS39410 Genome accession   NZ_CP107799
Coordinates   8896577..8897239 (-) Length   220 a.a.
NCBI ID   WP_326724567.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8891577..8902239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS39390 (OG266_39360) - 8892253..8893083 (-) 831 WP_371551666.1 alpha/beta fold hydrolase -
  OG266_RS39395 (OG266_39365) - 8893266..8894150 (+) 885 WP_329548938.1 RNA polymerase sigma-70 factor -
  OG266_RS39400 (OG266_39370) - 8894450..8895211 (+) 762 WP_266468362.1 GntR family transcriptional regulator -
  OG266_RS39405 (OG266_39375) - 8895320..8896477 (-) 1158 WP_371551669.1 ROK family transcriptional regulator -
  OG266_RS39410 (OG266_39380) vraR 8896577..8897239 (-) 663 WP_326724567.1 response regulator transcription factor Regulator
  OG266_RS39415 (OG266_39385) - 8897254..8898408 (-) 1155 WP_266468371.1 sensor histidine kinase -
  OG266_RS39420 (OG266_39390) - 8898517..8899452 (+) 936 WP_371551671.1 ABC transporter ATP-binding protein -
  OG266_RS39425 (OG266_39395) - 8899455..8900177 (+) 723 WP_371551673.1 ABC transporter permease -
  OG266_RS39430 (OG266_39400) mug 8900236..8900748 (-) 513 WP_371551675.1 G/U mismatch-specific DNA glycosylase -
  OG266_RS39435 (OG266_39405) purB 8900793..8902235 (-) 1443 WP_266468382.1 adenylosuccinate lyase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23422.05 Da        Isoelectric Point: 4.7428

>NTDB_id=646478 OG266_RS39410 WP_326724567.1 8896577..8897239(-) (vraR) [Streptomyces sp. NBC_00554 strain NBC 00554]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRQLRPDVVAMDVRMPLMDGIEATRAVLRTVADPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAAEYGDSAGNPAARAAMDRAALTER
EAEVLRLMTRGMSNAEIAARMIVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFVAPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=646478 OG266_RS39410 WP_326724567.1 8896577..8897239(-) (vraR) [Streptomyces sp. NBC_00554 strain NBC 00554]
ATGCCGGTCACCGTTCTCCTCGTCGACGACGAACCCCTCGTACGCGCTGGTCTGCGCGCCGTCCTGGAGGCCCAGCCCGA
CATCGAGGTCGTCGGGGAGGCCGCCGACGGTGCCGCGGTGATCCCGCTGGTACGGCAACTGCGGCCCGACGTCGTCGCCA
TGGACGTACGAATGCCCCTGATGGACGGCATCGAGGCCACACGCGCGGTGCTGCGGACCGTGGCCGATCCGCCGAAGATC
CTGGTGGTGACGACGTTCGAGAACGACGAGTACGTCTACGAGGCGCTGCGGGCGGGCGCCGACGGGTTTCTGCTGAAGCG
GGCGCGGCCGGCCGAGATCGTGCACGCGGTGAGGCTCGTCGCCGAGGGCGAGTCTCTGCTGTTCCCCGCTTCCGTACGGC
AGTTGGCCGCCGAGTACGGGGACAGCGCGGGGAATCCGGCTGCGCGCGCGGCCATGGATCGGGCGGCCCTGACCGAGCGG
GAGGCGGAGGTGCTGCGGCTGATGACGCGGGGGATGTCGAACGCCGAGATCGCCGCTCGGATGATCGTCGGGACCGAGAC
GGTCAAGTCCCATGTCAGCGCCGTACTGGCGAAGCTGGGGGCCCGGGATCGTACGCAGGCGGTCATCGCGGCGTACGAGT
CGGGGTTCGTGGCGCCCGGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.096

99.545

0.409
  degU Bacillus subtilis subsp. subtilis str. 168

36.283

100

0.373