Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG266_RS37160 Genome accession   NZ_CP107799
Coordinates   8409772..8410395 (-) Length   207 a.a.
NCBI ID   WP_266467545.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8404772..8415395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS37140 (OG266_37125) - 8405248..8406477 (-) 1230 WP_266467535.1 DUF349 domain-containing protein -
  OG266_RS37145 (OG266_37130) - 8406613..8407452 (-) 840 WP_329548753.1 peptidylprolyl isomerase -
  OG266_RS37150 (OG266_37135) - 8407640..8408347 (+) 708 WP_266467540.1 MBL fold metallo-hydrolase -
  OG266_RS37155 (OG266_37140) hisS 8408361..8409623 (+) 1263 WP_266467543.1 histidine--tRNA ligase -
  OG266_RS37160 (OG266_37145) vraR 8409772..8410395 (-) 624 WP_266467545.1 response regulator transcription factor Regulator
  OG266_RS37165 (OG266_37150) - 8410392..8411678 (-) 1287 WP_371551092.1 sensor histidine kinase -
  OG266_RS37170 (OG266_37155) - 8411675..8412520 (-) 846 WP_266467551.1 ABC transporter permease -
  OG266_RS37175 (OG266_37160) - 8412517..8413383 (-) 867 WP_371551094.1 ABC transporter ATP-binding protein -
  OG266_RS37180 (OG266_37165) - 8413523..8414164 (+) 642 WP_266467558.1 vitamin K epoxide reductase family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22130.63 Da        Isoelectric Point: 5.4174

>NTDB_id=646475 OG266_RS37160 WP_266467545.1 8409772..8410395(-) (vraR) [Streptomyces sp. NBC_00554 strain NBC 00554]
MIRIVLADDHPVVREGLRAMLSAEPDLEVIADASSGPQAEALAAELRPDIVLMDLRMPGGGGVDSIVRMTAAGLPCRVVV
LTTYETDRDILRAVEAGAAGYLLKDLPRGELADAVRAAARGETVLAPSVAARLVDQLRTKPERPRLSEREAAVLRLVAEG
CTNAEIGRRLFIGESTVKTHLLRVFGKLGVDDRTAAVTSAMRFGLLE

Nucleotide


Download         Length: 624 bp        

>NTDB_id=646475 OG266_RS37160 WP_266467545.1 8409772..8410395(-) (vraR) [Streptomyces sp. NBC_00554 strain NBC 00554]
GTGATCCGGATCGTCCTCGCCGACGACCATCCCGTCGTACGCGAAGGGCTGCGCGCGATGCTCAGCGCCGAGCCCGACCT
CGAGGTGATCGCCGACGCGTCCAGCGGGCCTCAGGCGGAGGCGCTGGCCGCCGAACTCCGGCCCGACATCGTGCTCATGG
ACCTGCGTATGCCGGGTGGCGGGGGTGTCGACTCGATCGTCCGGATGACCGCGGCCGGATTGCCGTGCCGGGTCGTCGTG
CTGACGACGTACGAGACGGACCGGGACATCCTGCGGGCCGTGGAGGCCGGGGCGGCGGGGTATCTGCTCAAGGATCTGCC
GCGCGGTGAGCTCGCGGACGCGGTTCGGGCGGCGGCTCGTGGGGAGACGGTGCTCGCGCCGTCCGTGGCCGCGCGGCTCG
TCGACCAGCTCCGTACGAAGCCGGAGCGGCCTCGGCTGTCCGAGCGCGAGGCGGCTGTCCTTCGGCTGGTCGCCGAAGGG
TGCACCAACGCGGAGATCGGGCGGCGGCTGTTCATCGGGGAGTCCACGGTGAAGACCCATCTGCTGCGGGTCTTCGGGAA
GTTGGGGGTGGATGACCGGACGGCGGCGGTGACGAGTGCGATGCGGTTCGGGTTGCTGGAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(146-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.681

100

0.377
  degU Bacillus subtilis subsp. subtilis str. 168

34.821

100

0.377