Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG266_RS20540 Genome accession   NZ_CP107799
Coordinates   4707662..4708372 (-) Length   236 a.a.
NCBI ID   WP_266457523.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4702662..4713372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS20525 (OG266_20520) - 4705652..4705906 (+) 255 WP_266457515.1 hypothetical protein -
  OG266_RS20530 (OG266_20525) - 4705925..4706245 (+) 321 WP_371547687.1 hypothetical protein -
  OG266_RS20535 (OG266_20530) - 4706355..4707575 (-) 1221 WP_371547688.1 cytochrome P450 -
  OG266_RS20540 (OG266_20535) vraR 4707662..4708372 (-) 711 WP_266457523.1 response regulator transcription factor Regulator
  OG266_RS20545 (OG266_20540) - 4708369..4709715 (-) 1347 WP_371547690.1 sensor histidine kinase -
  OG266_RS20550 (OG266_20545) - 4709872..4710546 (-) 675 WP_371547692.1 response regulator -
  OG266_RS20555 (OG266_20550) - 4710543..4711967 (-) 1425 WP_371552881.1 sensor histidine kinase -
  OG266_RS20560 (OG266_20555) - 4712119..4713363 (-) 1245 WP_371547694.1 acyltransferase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 25128.80 Da        Isoelectric Point: 4.7446

>NTDB_id=646442 OG266_RS20540 WP_266457523.1 4707662..4708372(-) (vraR) [Streptomyces sp. NBC_00554 strain NBC 00554]
MTGGTSGGTTSGTAGNTIRVLIADDQVMVREGFSVLLGAMPDIEVVGEAVNGREAVERVRELAPDVVLMDIRMPEMNGIE
ATREIVAANGAAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTRRLITEFSKLADEP
RLSATAQAAYGDLTDRETEVLVLIAQGLSNAEIATRLFVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPR

Nucleotide


Download         Length: 711 bp        

>NTDB_id=646442 OG266_RS20540 WP_266457523.1 4707662..4708372(-) (vraR) [Streptomyces sp. NBC_00554 strain NBC 00554]
ATGACGGGCGGCACCAGCGGCGGAACCACCAGCGGTACCGCCGGCAACACCATCCGCGTACTGATAGCCGATGACCAGGT
GATGGTCCGCGAGGGCTTCTCCGTGCTGCTCGGCGCGATGCCGGACATCGAGGTGGTCGGCGAGGCGGTCAACGGTCGGG
AGGCCGTCGAGCGGGTCCGTGAGCTGGCCCCGGACGTCGTGCTGATGGACATCCGGATGCCGGAGATGAACGGGATCGAG
GCGACCCGGGAGATCGTCGCGGCGAACGGCGCCGCGAAGGTGCTGGTCCTGACGACGTTCGACCTCGACGAGTACGTGTA
CCAGGCGCTGCGGGCGGGAGCCTCCGGCTTCCTCCTCAAGGACGCCTCGGCGCGTCAGCTCGCCGACGGGGTGAGGGTGG
TGGCGGCCGGGGAGGCGCTGCTCGCCCCCTCGGTCACCAGGCGGTTGATCACCGAGTTCTCCAAGCTCGCGGACGAGCCA
CGGCTCTCGGCCACGGCACAGGCGGCGTACGGCGACCTCACCGACCGGGAGACCGAGGTGCTGGTCCTCATCGCGCAGGG
CCTGTCGAACGCGGAGATCGCGACCCGGCTGTTCGTCGCCGAGTCCACGATCAAGACCCATGTGAGCCGGATCCTGGTGA
AGCTGGGCCTGCGGGACCGTACGCAGGCGGCGGTGTTCGCGTACGAGGCACGGCTGGTCACGCCCAGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(173-227)

Response regulator receiver domain (Response_reg)

(20-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.24

91.949

0.407
  degU Bacillus subtilis subsp. subtilis str. 168

41.593

95.763

0.398