Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG266_RS19310 Genome accession   NZ_CP107799
Coordinates   4438027..4439436 (+) Length   469 a.a.
NCBI ID   WP_371547279.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4433027..4444436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS19290 (OG266_19290) - 4433049..4433873 (-) 825 WP_266456932.1 sugar phosphate isomerase/epimerase -
  OG266_RS19295 (OG266_19295) - 4434071..4435003 (-) 933 WP_266456935.1 Ppx/GppA phosphatase family protein -
  OG266_RS19300 (OG266_19300) - 4435075..4435914 (+) 840 WP_371547273.1 hypothetical protein -
  OG266_RS19305 (OG266_19305) - 4435948..4437819 (-) 1872 WP_371547276.1 hypothetical protein -
  OG266_RS19310 (OG266_19310) radA/sms 4438027..4439436 (+) 1410 WP_371547279.1 DNA repair protein RadA Machinery gene
  OG266_RS19315 (OG266_19315) disA 4439508..4440632 (+) 1125 WP_266830670.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG266_RS19320 (OG266_19320) - 4440728..4441555 (-) 828 WP_329546254.1 hypothetical protein -
  OG266_RS19325 (OG266_19325) - 4441957..4442871 (+) 915 WP_371547281.1 A/G-specific adenine glycosylase -
  OG266_RS19330 (OG266_19330) - 4443160..4443711 (+) 552 WP_266456951.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49632.84 Da        Isoelectric Point: 8.0022

>NTDB_id=646433 OG266_RS19310 WP_371547279.1 4438027..4439436(+) (radA/sms) [Streptomyces sp. NBC_00554 strain NBC 00554]
MAVRTKSAKDRPSYRCTECGWQTAKWLGRCSECQAWGTVEEYGVPAVRTTAPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLIVDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKIPPGMKVLEVADMGAALSVLPRSRRREAPREEEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=646433 OG266_RS19310 WP_371547279.1 4438027..4439436(+) (radA/sms) [Streptomyces sp. NBC_00554 strain NBC 00554]
ATGGCTGTCCGTACGAAATCCGCGAAGGACCGACCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGTTGCTCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGTGCCCGCTGTCCGTACGACGGCACCGGGCC
GGGTCACCACGTCCGCGGTCCCCATCGGGCAGGTCGACGGCCGCCAGGCCACCGCGCGCTCCACCGGAGTGCCCGAGCTG
GACCGCGTCCTCGGCGGCGGTCTCGTACCCGGCGCGGTCGTCCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACCCT
GCTCCTTGACGTGGCGGCCAAGGCGGCGAGCGACGAGCACCGCACGTTGTACGTGACCGGGGAGGAGTCGGCCAGTCAGG
TGCGGCTCCGCGCCGACCGCATCAAGGCCATCGACGACCATCTCTATCTCGCCGCCGAGACCGATCTGGCCGCCGTTCTC
GGTCACTTGGACGCGGTGAAACCGTCCCTGCTCATCGTGGACTCCGTACAGACCGTCGCCTCCCCGGAGATCGACGGTGC
GCCGGGCGGCATGGCCCAGGTCCGGGAGGTCGCCGGTGCGCTCATCCGCGCTTCCAAGGAGCGCGGCATGTCCACCCTCC
TCGTCGGCCATGTCACCAAGGACGGCGCGATCGCGGGCCCCCGCCTCCTCGAACACCTCGTGGACGTCGTCCTGAGCTTC
GAGGGCGACCGGCACGCGCGCCTCAGGCTCGTACGAGGGGTCAAGAACCGTTACGGGACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGACTGGCCGACCCCTCGGGCCTGTTCCTGACCCGCCGCGCGGAGGCGGTCCCCG
GCACCTGTCTGACGGTCACTCTGGAGGGCCGCCGCCCCCTGGTCGCCGAAGTGCAGGCGCTCACGGTCGACTCGCAGATC
CCCTCCCCGCGGCGTACGACCTCCGGTCTGGAGACCTCCCGCGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGGCCG
GATCACCGCCCTGGGAAAGCGGGACATCTACTCGGCCACGGTCGGCGGAGTGAAGCTCTCCGAGCCCGCCGCGGACCTTG
CGATCGCGCTCGCCCTCGCCTCCGCCGCGAGCGACACCCCGCTGCCGAAGAACCTCGTGGCGATCGGCGAAGTGGGGCTC
GCCGGGGAGGTCAGACGGGTCACGGGCGTTCAGCGCCGGCTCGCCGAAGCCCACCGGCTCGGCTTCACCCACGCCCTCGT
CCCGAGCGATCCCGGCAAGATCCCTCCCGGCATGAAGGTCCTGGAAGTCGCCGACATGGGAGCCGCGCTGAGCGTCCTGC
CGAGGTCGCGTCGTCGAGAGGCCCCACGGGAGGAGGAAGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.699

96.375

0.412
  radA Streptococcus mitis NCTC 12261

44.009

92.537

0.407
  radA Streptococcus mitis SK321

44.009

92.537

0.407
  radA Streptococcus pneumoniae TIGR4

44.131

90.832

0.401
  radA Streptococcus pneumoniae D39

44.131

90.832

0.401
  radA Streptococcus pneumoniae Rx1

44.131

90.832

0.401
  radA Streptococcus pneumoniae R6

44.131

90.832

0.401