Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG266_RS13685 Genome accession   NZ_CP107799
Coordinates   3198162..3198803 (+) Length   213 a.a.
NCBI ID   WP_371545845.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3193162..3203803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS13660 (OG266_13650) - 3194048..3194371 (-) 324 WP_261707178.1 STAS domain-containing protein -
  OG266_RS13665 (OG266_13655) - 3194548..3195396 (-) 849 WP_371545838.1 3-hydroxyacyl-CoA dehydrogenase family protein -
  OG266_RS13670 (OG266_13660) - 3195686..3196258 (+) 573 WP_371545839.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  OG266_RS13675 (OG266_13665) - 3196175..3196789 (-) 615 WP_371545841.1 hypothetical protein -
  OG266_RS13680 (OG266_13670) - 3196942..3198165 (+) 1224 WP_371545843.1 sensor histidine kinase -
  OG266_RS13685 (OG266_13675) vraR 3198162..3198803 (+) 642 WP_371545845.1 response regulator Regulator
  OG266_RS13690 (OG266_13680) - 3198908..3200752 (+) 1845 WP_329545450.1 glycoside hydrolase family 18 chitinase -
  OG266_RS13695 (OG266_13685) - 3200771..3201217 (-) 447 WP_266454203.1 DUF2550 domain-containing protein -
  OG266_RS13700 (OG266_13690) - 3201356..3201730 (-) 375 WP_266454205.1 F0F1 ATP synthase subunit epsilon -
  OG266_RS13705 (OG266_13695) atpD 3201874..3203310 (-) 1437 WP_266454206.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22893.55 Da        Isoelectric Point: 4.9962

>NTDB_id=646419 OG266_RS13685 WP_371545845.1 3198162..3198803(+) (vraR) [Streptomyces sp. NBC_00554 strain NBC 00554]
MIRVLVAEDQSAVRAGLVLILRSAPDIEVVGEAADGEQAVALARRLRPDLVLMDVQMPRLDGVSATRQVVAEQLADVLVL
TTFDLDEYVFGALRAGASGFLLKNTEARQLLEAVRTVAGGEGLIAPAVTRRLIAEFAARPVRDPGPGPEVLEALTRRERE
VLSCLGEGMSNAEIARRLEMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGV

Nucleotide


Download         Length: 642 bp        

>NTDB_id=646419 OG266_RS13685 WP_371545845.1 3198162..3198803(+) (vraR) [Streptomyces sp. NBC_00554 strain NBC 00554]
ATGATCCGCGTGCTCGTCGCCGAGGATCAGTCCGCCGTACGGGCCGGACTCGTCCTCATCCTGCGCAGCGCGCCCGACAT
CGAGGTGGTCGGCGAGGCCGCGGACGGCGAGCAGGCGGTCGCGCTCGCCCGCCGGCTCCGGCCGGATCTGGTCCTGATGG
ACGTCCAGATGCCCCGGCTCGACGGAGTCTCCGCCACCCGCCAGGTCGTCGCCGAGCAGCTGGCCGACGTGCTCGTCCTC
ACCACCTTCGACCTCGACGAGTACGTCTTCGGGGCGCTGCGCGCGGGCGCCTCCGGGTTCCTGCTGAAGAACACCGAGGC
GCGCCAACTCCTGGAAGCCGTCCGCACGGTCGCAGGCGGCGAGGGGCTGATCGCGCCCGCGGTCACCCGCCGGCTGATCG
CCGAGTTCGCCGCAAGGCCCGTACGGGATCCAGGGCCCGGCCCGGAGGTCCTCGAAGCCCTCACCCGGCGCGAACGCGAG
GTGCTCTCCTGCCTCGGCGAGGGGATGTCCAACGCGGAGATCGCGAGGCGCCTCGAGATGGCGGAGGCGACGGTGAAGAC
CCACGTCAGCCGCCTCCTGGGGAAGCTCGAGCTGCGCAGCCGGGTCCAAGCGGCGGTGCTGGCCCAGGAGTTGGGCGTGT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.627

98.122

0.408
  degU Bacillus subtilis subsp. subtilis str. 168

39.013

100

0.408