Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG266_RS11100 Genome accession   NZ_CP107799
Coordinates   2550220..2550897 (-) Length   225 a.a.
NCBI ID   WP_371545125.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2545220..2555897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS11080 (OG266_11075) - 2545552..2547342 (+) 1791 WP_371545121.1 ATP-binding protein -
  OG266_RS11085 (OG266_11080) - 2547339..2548019 (+) 681 WP_371545123.1 response regulator -
  OG266_RS11090 (OG266_11085) - 2548038..2549630 (-) 1593 WP_266474292.1 cation acetate symporter -
  OG266_RS11095 (OG266_11090) - 2549627..2550115 (-) 489 WP_266474293.1 DUF485 domain-containing protein -
  OG266_RS11100 (OG266_11095) vraR 2550220..2550897 (-) 678 WP_371545125.1 response regulator Regulator
  OG266_RS11105 (OG266_11100) - 2550894..2552045 (-) 1152 WP_371545128.1 sensor histidine kinase -
  OG266_RS11110 (OG266_11105) - 2552042..2552569 (-) 528 WP_371545130.1 DUF1453 domain-containing protein -
  OG266_RS11115 (OG266_11110) - 2553102..2555225 (-) 2124 WP_266474297.1 type IIA DNA topoisomerase subunit B -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 23983.42 Da        Isoelectric Point: 4.7735

>NTDB_id=646407 OG266_RS11100 WP_371545125.1 2550220..2550897(-) (vraR) [Streptomyces sp. NBC_00554 strain NBC 00554]
MTDQEGRKPARVVVADDQTVVREGIVMLLGLLPGIEVVGAAGDGDEAVALVAELAPDVVLMDLRMPRCDGVEATRRIRAE
YPGTQVVVLTTYEDDESLFPALRAGARGYLTKDAGGDEIVRAVRSVLSGEAGLSPSVQRRLLERLSEPEPVAPPEAPDGL
TARETEVLLLIAEGLTNQEIARALHVSTATVKTHINNLFAKTGIKDRAQAVRYAYGKGLVRPPAG

Nucleotide


Download         Length: 678 bp        

>NTDB_id=646407 OG266_RS11100 WP_371545125.1 2550220..2550897(-) (vraR) [Streptomyces sp. NBC_00554 strain NBC 00554]
ATGACGGATCAGGAGGGGAGGAAACCGGCGCGGGTCGTGGTGGCGGACGACCAGACCGTGGTGCGCGAGGGCATCGTGAT
GCTGCTGGGGCTGTTGCCCGGGATCGAGGTCGTCGGTGCGGCCGGAGACGGTGACGAGGCCGTGGCGCTTGTCGCCGAAC
TCGCCCCGGACGTCGTGCTGATGGATCTGCGGATGCCTCGTTGCGACGGTGTCGAGGCGACCCGGCGCATCCGTGCCGAG
TACCCGGGAACGCAGGTCGTCGTGCTCACCACGTACGAGGACGACGAGTCTCTGTTTCCCGCGCTCAGAGCGGGGGCGCG
GGGCTATCTGACCAAGGACGCGGGAGGTGACGAGATCGTCAGAGCGGTGCGGAGTGTGCTCTCCGGGGAGGCGGGGCTCT
CGCCGAGTGTCCAACGGCGGCTGCTGGAGCGGCTGTCGGAGCCGGAGCCGGTCGCGCCTCCGGAAGCGCCGGACGGGCTC
ACCGCACGCGAGACGGAAGTGCTGCTCCTGATCGCCGAGGGCCTCACCAACCAGGAGATCGCCCGCGCGTTGCACGTCTC
CACGGCGACGGTGAAGACTCACATCAACAACCTCTTCGCCAAGACGGGGATCAAGGACCGGGCTCAGGCAGTCCGTTACG
CCTATGGGAAGGGTCTCGTACGGCCACCGGCAGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-123)

Bacterial regulatory proteins, luxR family (GerE)

(159-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.232

93.778

0.387
  degU Bacillus subtilis subsp. subtilis str. 168

37.387

98.667

0.369