Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG266_RS05460 Genome accession   NZ_CP107799
Coordinates   1199424..1200059 (+) Length   211 a.a.
NCBI ID   WP_266472653.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1194424..1205059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS05440 (OG266_05430) - 1194656..1195726 (+) 1071 WP_371543346.1 LacI family DNA-binding transcriptional regulator -
  OG266_RS05445 (OG266_05435) - 1196041..1197699 (-) 1659 WP_371543347.1 molybdopterin-dependent oxidoreductase -
  OG266_RS05450 (OG266_05440) - 1197738..1197941 (-) 204 WP_266472649.1 hypothetical protein -
  OG266_RS05455 (OG266_05445) - 1198158..1199405 (+) 1248 WP_371543350.1 sensor histidine kinase -
  OG266_RS05460 (OG266_05450) vraR 1199424..1200059 (+) 636 WP_266472653.1 response regulator transcription factor Regulator
  OG266_RS05470 (OG266_05460) - 1200601..1201368 (-) 768 WP_371543352.1 NPP1 family protein -
  OG266_RS05475 (OG266_05465) - 1201639..1202553 (-) 915 WP_371543355.1 YceI family protein -
  OG266_RS05480 (OG266_05470) - 1202729..1203814 (-) 1086 WP_371543358.1 maleylacetate reductase -
  OG266_RS05485 (OG266_05475) - 1203811..1204674 (-) 864 WP_371543361.1 intradiol ring-cleavage dioxygenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22422.91 Da        Isoelectric Point: 6.2288

>NTDB_id=646388 OG266_RS05460 WP_266472653.1 1199424..1200059(+) (vraR) [Streptomyces sp. NBC_00554 strain NBC 00554]
MTIHILIVDDHPVVRFGLRGMLEAYDDLRVVGEAGSGDEAIVLAAATRPDVILMDLRMPGTDGATATARIRQEHPGIRVL
VLTTYEGDADILPAIEAGATGYLLKDTPIGTLTDAIRAAARGETVLAPLVAARLVTHMQAPAGEQLTPREVQVLGLVARG
LSNSEIGRQLYIGEATVKTHLLRTFVKLGVNDRTAAVTIALSRGILTTPHQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=646388 OG266_RS05460 WP_266472653.1 1199424..1200059(+) (vraR) [Streptomyces sp. NBC_00554 strain NBC 00554]
ATGACTATCCACATCCTGATCGTCGATGACCATCCCGTCGTACGCTTCGGCCTCCGCGGCATGCTTGAGGCCTACGACGA
CCTGCGCGTCGTTGGAGAGGCAGGCTCCGGCGACGAGGCGATCGTCCTCGCCGCCGCGACGCGCCCGGACGTCATCCTGA
TGGATCTGCGGATGCCGGGCACCGATGGCGCCACCGCGACGGCGCGCATCCGCCAGGAGCACCCCGGCATTCGCGTGCTC
GTGCTGACCACCTACGAAGGTGACGCCGACATCCTGCCGGCGATCGAGGCCGGCGCCACCGGTTACCTGCTCAAGGACAC
GCCGATCGGTACCCTCACCGACGCGATACGGGCGGCCGCCCGCGGCGAAACCGTCCTCGCCCCACTGGTAGCCGCCCGGC
TGGTGACCCACATGCAGGCACCGGCCGGAGAGCAGTTGACCCCCCGCGAGGTTCAGGTACTCGGCCTCGTCGCGCGAGGT
CTGTCCAACAGCGAGATCGGCCGACAGCTGTACATCGGCGAAGCGACGGTGAAGACGCACCTACTGCGAACGTTCGTCAA
GCTGGGAGTCAACGACCGCACCGCGGCCGTCACCATCGCTCTCTCGCGCGGCATCCTCACCACACCACACCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(145-200)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.788

98.578

0.422
  degU Bacillus subtilis subsp. subtilis str. 168

34.842

100

0.365