Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG956_RS32120 Genome accession   NZ_CP107796
Coordinates   7262827..7263492 (+) Length   221 a.a.
NCBI ID   WP_330341517.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00557     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7257827..7268492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG956_RS32100 (OG956_32100) - 7258719..7259963 (+) 1245 WP_330341513.1 geranylgeranyl reductase family protein -
  OG956_RS32105 (OG956_32105) - 7260123..7260572 (-) 450 WP_330341514.1 nitroreductase family deazaflavin-dependent oxidoreductase -
  OG956_RS32110 (OG956_32110) - 7260700..7261392 (+) 693 WP_330341515.1 TetR/AcrR family transcriptional regulator -
  OG956_RS32115 (OG956_32115) - 7261613..7262830 (+) 1218 WP_330341516.1 sensor histidine kinase -
  OG956_RS32120 (OG956_32120) vraR 7262827..7263492 (+) 666 WP_330341517.1 response regulator transcription factor Regulator
  OG956_RS32125 (OG956_32125) - 7263453..7263701 (-) 249 WP_330341518.1 DUF6332 family protein -
  OG956_RS32130 (OG956_32130) - 7263694..7265184 (-) 1491 WP_330341519.1 MFS transporter -
  OG956_RS32135 (OG956_32135) - 7265270..7265677 (+) 408 WP_330341520.1 MarR family transcriptional regulator -
  OG956_RS32140 (OG956_32140) - 7265664..7266404 (-) 741 WP_330341521.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  OG956_RS32145 (OG956_32145) - 7266490..7267668 (-) 1179 WP_330342998.1 MFS transporter -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23928.67 Da        Isoelectric Point: 5.0250

>NTDB_id=646378 OG956_RS32120 WP_330341517.1 7262827..7263492(+) (vraR) [Streptomyces sp. NBC_00557]
MIRVLLADDQSLVRAGFGALLGAQPDIEVAGEAADGEEALHRVRELRPDVVLMDIRMPLLDGLAATRRITGDAELKDVKV
VMLTTFELDEYVFEAIRSGASGFLVKDTEPDELVRAVRAVVQGDALLSPGVTRRLIAEFAARSKEPAAADALAHLTERER
EVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=646378 OG956_RS32120 WP_330341517.1 7262827..7263492(+) (vraR) [Streptomyces sp. NBC_00557]
GTGATCCGGGTACTGCTCGCCGACGACCAGTCGCTGGTGCGGGCCGGTTTCGGGGCGCTGCTCGGCGCGCAGCCGGACAT
CGAGGTGGCCGGGGAGGCGGCCGACGGCGAGGAGGCGCTGCACCGGGTGCGGGAACTGCGGCCGGACGTCGTCCTGATGG
ACATCCGCATGCCCCTGCTGGACGGCCTCGCCGCGACCCGGCGCATCACCGGCGACGCGGAGCTGAAGGACGTGAAGGTG
GTCATGCTCACCACCTTCGAGCTGGACGAGTACGTCTTCGAGGCGATCCGCTCCGGCGCCTCCGGCTTCCTGGTGAAGGA
CACCGAACCGGACGAACTCGTGCGCGCGGTGCGGGCGGTGGTGCAGGGTGACGCCCTGCTGTCGCCGGGCGTCACCCGCC
GGCTGATCGCCGAGTTCGCGGCCCGCTCCAAGGAGCCCGCGGCGGCCGACGCCCTCGCTCACCTCACCGAGCGGGAGCGG
GAGGTGATGGCGCTGGTCGGCATCGGCCTGTCCAACGAGGAGATCGCCCGCCGCCTGGTGGTCAGCCCCCTCACCGCCAA
GACCCATGTGAGCCGCACGATGGTCAAACTGGGCGCCCGGGATCGCGCCCAACTCGTCGTCCTGGCCTATGAGTCGGGGT
TGGTGCGGCCTGGGTGGCTGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.14

97.285

0.371
  degU Bacillus subtilis subsp. subtilis str. 168

36.283

100

0.371