Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG956_RS16385 Genome accession   NZ_CP107796
Coordinates   3824958..3825626 (-) Length   222 a.a.
NCBI ID   WP_330338712.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00557     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3819958..3830626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG956_RS16360 (OG956_16345) - 3820398..3820559 (-) 162 WP_330338707.1 hypothetical protein -
  OG956_RS16365 (OG956_16350) - 3820565..3821086 (-) 522 WP_330338708.1 MarR family transcriptional regulator -
  OG956_RS16370 (OG956_16355) - 3821161..3822054 (+) 894 WP_330338709.1 ABC transporter ATP-binding protein -
  OG956_RS16375 (OG956_16360) - 3822051..3823622 (+) 1572 WP_330338710.1 ABC transporter permease -
  OG956_RS16380 (OG956_16365) - 3823659..3824879 (-) 1221 WP_330338711.1 cytochrome P450 -
  OG956_RS16385 (OG956_16370) vraR 3824958..3825626 (-) 669 WP_330338712.1 response regulator transcription factor Regulator
  OG956_RS16390 (OG956_16375) - 3825623..3826963 (-) 1341 WP_330338713.1 histidine kinase -
  OG956_RS16395 (OG956_16380) - 3827093..3827995 (-) 903 WP_330338714.1 alpha/beta hydrolase -
  OG956_RS16400 (OG956_16385) kynU 3828287..3829489 (-) 1203 WP_330338715.1 kynureninase -
  OG956_RS16405 (OG956_16390) - 3829482..3830330 (-) 849 WP_330338716.1 tryptophan 2,3-dioxygenase family protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24008.74 Da        Isoelectric Point: 4.7446

>NTDB_id=646350 OG956_RS16385 WP_330338712.1 3824958..3825626(-) (vraR) [Streptomyces sp. NBC_00557]
MTIRVLVADDQMMVREGFSVLLNAMPDIEVVGEAVNGRQAVERVRELGPDVVLMDIRMPELNGIEATREIVAADASAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLITEFSRLADPPRPIPSTARAAYGDLT
ERETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=646350 OG956_RS16385 WP_330338712.1 3824958..3825626(-) (vraR) [Streptomyces sp. NBC_00557]
ATGACCATCCGCGTACTGGTCGCGGACGACCAGATGATGGTCCGCGAGGGCTTCTCGGTCCTGCTGAACGCGATGCCGGA
CATCGAGGTCGTCGGCGAGGCCGTCAACGGAAGGCAGGCGGTCGAACGGGTCCGTGAACTCGGCCCGGACGTCGTGCTGA
TGGACATCCGCATGCCCGAGCTGAACGGCATCGAGGCCACCCGGGAGATCGTGGCGGCCGACGCGTCGGCGAAGGTGCTC
GTCCTGACCACCTTCGACCTGGACGAGTACGTGTACCAGGCCCTGCGGGCGGGCGCCTCCGGCTTCCTCCTCAAGGACGC
CTCGGCCCGCCAACTGGCCGACGGCGTAAGGGTGGTGGCCGCCGGCGAGGCCCTGCTCGCCCCCTCGGTCACCAAGCGCC
TGATCACGGAGTTCTCCCGCCTCGCGGACCCCCCGCGCCCGATCCCGTCGACGGCCCGGGCGGCCTACGGCGACCTCACG
GAACGCGAGACGGAGGTCCTGGTCCTGATCGCCCAGGGCCTGTCCAACGCGGAGATCGCCGAACGCCTGGTGGTCGCCGA
GTCCACCATCAAGACCCACGTAAGCCGCATCCTGGTCAAACTGGGCCTGCGCGACCGCACGCAGGCGGCGGTCTTCGCGT
ACGAGGCGCGCCTGGTGACACCCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(159-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.379

98.649

0.428
  degU Bacillus subtilis subsp. subtilis str. 168

42.396

97.748

0.414