Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG956_RS16290 Genome accession   NZ_CP107796
Coordinates   3807434..3808033 (-) Length   199 a.a.
NCBI ID   WP_199211360.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00557     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3802434..3813033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG956_RS16255 (OG956_16240) - 3803270..3803473 (+) 204 WP_330338689.1 hypothetical protein -
  OG956_RS16260 (OG956_16245) - 3803463..3804041 (-) 579 WP_330338690.1 Uma2 family endonuclease -
  OG956_RS16265 (OG956_16250) - 3804092..3805054 (-) 963 WP_330338691.1 hypothetical protein -
  OG956_RS16270 (OG956_16255) - 3805330..3805518 (-) 189 WP_330338692.1 DUF397 domain-containing protein -
  OG956_RS16275 (OG956_16260) - 3805515..3806291 (-) 777 WP_330342858.1 helix-turn-helix transcriptional regulator -
  OG956_RS16280 (OG956_16265) - 3806394..3806828 (+) 435 WP_330338693.1 hypothetical protein -
  OG956_RS16285 (OG956_16270) - 3806779..3807441 (-) 663 WP_330338694.1 DUF5063 domain-containing protein -
  OG956_RS16290 (OG956_16275) recR 3807434..3808033 (-) 600 WP_199211360.1 recombination mediator RecR Machinery gene
  OG956_RS16295 (OG956_16280) - 3808085..3808429 (-) 345 WP_330342859.1 YbaB/EbfC family nucleoid-associated protein -
  OG956_RS16300 (OG956_16285) - 3808692..3809441 (+) 750 WP_330338695.1 SLATT domain-containing protein -
  OG956_RS16305 (OG956_16290) - 3809458..3811461 (-) 2004 WP_330338696.1 serine/threonine-protein kinase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21730.11 Da        Isoelectric Point: 4.9909

>NTDB_id=646349 OG956_RS16290 WP_199211360.1 3807434..3808033(-) (recR) [Streptomyces sp. NBC_00557]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPADVKRLAQALLEVKAKVRFCATCGNVAQEELCNICRDPRRDPSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=646349 OG956_RS16290 WP_199211360.1 3807434..3808033(-) (recR) [Streptomyces sp. NBC_00557]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCGGCGGACGTGAAGCGGCTCGCGCAGGCGCTCCTGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAACGTGGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCCCTCGGTT
ATCTGCGTGGTCGAGGAACCCAAGGACGTGGTCGCCATCGAGCGCACCCGTGAGTTCCGTGGCCGCTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTGGGTCCCGACGACCTGCGTATACGAGAACTTCTCGCACGGTTGGCCGACGGGA
CGGTCACGGAACTGATCCTGGCCACGGACCCGAATCTGGAGGGCGAGGCCACAGCGACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462