Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG956_RS15495 Genome accession   NZ_CP107796
Coordinates   3630835..3632244 (+) Length   469 a.a.
NCBI ID   WP_330338558.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00557     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3625835..3637244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG956_RS15475 (OG956_15460) - 3625915..3626727 (-) 813 WP_330338554.1 sugar phosphate isomerase/epimerase -
  OG956_RS15480 (OG956_15465) - 3626878..3627810 (-) 933 WP_330338555.1 Ppx/GppA phosphatase family protein -
  OG956_RS15485 (OG956_15470) - 3627882..3628715 (+) 834 WP_330338556.1 hypothetical protein -
  OG956_RS15490 (OG956_15475) - 3628886..3630637 (-) 1752 WP_330338557.1 hypothetical protein -
  OG956_RS15495 (OG956_15480) radA/sms 3630835..3632244 (+) 1410 WP_330338558.1 DNA repair protein RadA Machinery gene
  OG956_RS15500 (OG956_15485) disA 3632326..3633450 (+) 1125 WP_330338559.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG956_RS15505 (OG956_15490) - 3633492..3634310 (-) 819 WP_330342849.1 hypothetical protein -
  OG956_RS15510 (OG956_15495) - 3634491..3635366 (+) 876 WP_330338560.1 A/G-specific adenine glycosylase -
  OG956_RS15515 (OG956_15500) - 3635643..3636182 (+) 540 WP_330338561.1 SigE family RNA polymerase sigma factor -
  OG956_RS15520 (OG956_15505) - 3636170..3636820 (+) 651 WP_330338562.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49755.91 Da        Isoelectric Point: 7.7223

>NTDB_id=646344 OG956_RS15495 WP_330338558.1 3630835..3632244(+) (radA/sms) [Streptomyces sp. NBC_00557]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTSSALPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASAEHRTLYVTGEESASQVRLRADRIGALHDELYLAAETDLSAVL
GHLDEVKPSLLILDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAQRLGFTHALVPTDPGKVPPGMKVLEVADMGDALRVLPRSRRREAPREAEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=646344 OG956_RS15495 WP_330338558.1 3630835..3632244(+) (radA/sms) [Streptomyces sp. NBC_00557]
ATGGCTGCCCGTACCAAGACCACCAAGGACCGCCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGCACCGTCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGGCACCGGGCC
GGGTGACGTCGTCCGCGCTGCCCATCGGCCAGGTCGACGGCCGGCAGGCCACCGCCCGCTCGACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGCCTGGTGCCCGGCGCGGTCGTGCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACGCT
GCTGCTGGACGTGGCCGCCAAGTCCGCGAGCGCCGAGCACCGCACCCTCTATGTGACCGGCGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGCGCGGACCGCATCGGCGCCCTGCACGACGAGCTGTATCTGGCGGCCGAGACGGACCTGTCCGCCGTCCTC
GGCCATCTGGACGAGGTCAAGCCGTCCCTGCTGATCCTCGACTCGGTGCAGACGGTCGCCTCCCCGGAGATCGAGGGCGC
GCCGGGCGGCATGGCCCAGGTGCGTGAGGTGGCGGGCGCGCTGATCCGCGCCTCGAAGGAGCGGGGCATGTCCACTCTCC
TTGTGGGCCATGTCACGAAGGACGGCGCGATCGCGGGCCCCCGCCTGCTGGAGCACCTGGTGGACGTCGTCCTGCACTTC
GAGGGCGACCGGCACGCGCGCCTGCGCCTGGTCCGCGGCGTGAAGAACCGCTACGGGGCCACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGGCTCGCCGACCCCAGCGGCCTCTTCCTGACCCGCAGGGACGAGCCGGTTCCGG
GTACGTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTGGCCGAGGTGCAGGCGCTGACCGTGGACTCCCAGATC
CCCTCCCCGCGCCGGACGACCTCGGGTCTGGAGACCTCGCGGGTGTCGATGATGCTGGCCGTCCTGGAGCAGCGCGGCCG
GATCAGCGCGCTCGGCAAGCGGGACATCTACTCCGCGACGGTCGGCGGGGTGAAGCTGTCGGAGCCGGCCGCCGACCTCG
CGATCGCCCTCGCGCTGGCCTCCGCGGCCAGCGACACCCCGCTGCCGAAGAACCTGGTCGCGATCGGCGAGGTGGGCCTC
GCGGGCGAGGTCAGACGGGTGACGGGCGTGCAGCGCAGGCTCGCCGAGGCGCAGCGGCTGGGCTTCACGCACGCGCTCGT
GCCGACCGATCCGGGCAAGGTGCCGCCCGGCATGAAGGTCCTGGAAGTCGCCGACATGGGGGACGCCCTCCGGGTGCTGC
CGCGCTCCCGTCGGCGAGAGGCCCCACGGGAGGCGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.805

96.375

0.422
  radA Streptococcus mitis SK321

42.984

95.736

0.412
  radA Streptococcus mitis NCTC 12261

42.984

95.736

0.412
  radA Streptococcus pneumoniae Rx1

42.539

95.736

0.407
  radA Streptococcus pneumoniae D39

42.539

95.736

0.407
  radA Streptococcus pneumoniae R6

42.539

95.736

0.407
  radA Streptococcus pneumoniae TIGR4

42.539

95.736

0.407