Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   L0961_RS15140 Genome accession   NZ_CP090905
Coordinates   3053988..3054128 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain Yao     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3048988..3059128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0961_RS15115 (L0961_15115) - 3049317..3049700 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  L0961_RS15120 (L0961_15120) comA 3049722..3050366 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  L0961_RS15125 (L0961_15125) - 3050447..3052764 (-) 2318 Protein_2930 histidine kinase -
  L0961_RS15130 (L0961_15130) comX 3052778..3052951 (-) 174 WP_012118314.1 competence pheromone ComX -
  L0961_RS15135 (L0961_15135) - 3052920..3053780 (-) 861 WP_159073777.1 polyprenyl synthetase family protein -
  L0961_RS15140 (L0961_15140) degQ 3053988..3054128 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  L0961_RS15145 (L0961_15145) - 3054594..3054935 (+) 342 WP_014305721.1 hypothetical protein -
  L0961_RS15150 (L0961_15150) - 3054942..3056162 (-) 1221 WP_003152038.1 EAL and HDOD domain-containing protein -
  L0961_RS15155 (L0961_15155) - 3056292..3057758 (-) 1467 WP_014305722.1 nicotinate phosphoribosyltransferase -
  L0961_RS15160 (L0961_15160) - 3057776..3058327 (-) 552 WP_003152033.1 cysteine hydrolase family protein -
  L0961_RS15165 (L0961_15165) - 3058424..3058822 (-) 399 WP_003152031.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=646329 L0961_RS15140 WP_003152043.1 3053988..3054128(-) (degQ) [Bacillus velezensis strain Yao]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=646329 L0961_RS15140 WP_003152043.1 3053988..3054128(-) (degQ) [Bacillus velezensis strain Yao]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891