Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG956_RS08865 Genome accession   NZ_CP107796
Coordinates   2180364..2181143 (+) Length   259 a.a.
NCBI ID   WP_330337407.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00557     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2175364..2186143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG956_RS08850 (OG956_08835) - 2175585..2176118 (+) 534 WP_330337404.1 TerD family protein -
  OG956_RS08855 (OG956_08840) - 2176197..2179082 (-) 2886 WP_330337405.1 vitamin B12-dependent ribonucleotide reductase -
  OG956_RS08860 (OG956_08845) nrdR 2179247..2179798 (-) 552 WP_330337406.1 transcriptional regulator NrdR -
  OG956_RS08865 (OG956_08850) dinR/lexA 2180364..2181143 (+) 780 WP_330337407.1 transcriptional repressor LexA Regulator
  OG956_RS08870 (OG956_08855) - 2181294..2183282 (-) 1989 WP_330337408.1 ATP-dependent DNA helicase -
  OG956_RS08875 (OG956_08860) - 2183514..2184314 (-) 801 WP_330337409.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28027.82 Da        Isoelectric Point: 6.9854

>NTDB_id=646328 OG956_RS08865 WP_330337407.1 2180364..2181143(+) (dinR/lexA) [Streptomyces sp. NBC_00557]
MTTTADSATITAQDRSQGRVEAVHVMNEATNPEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAVTMQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=646328 OG956_RS08865 WP_330337407.1 2180364..2181143(+) (dinR/lexA) [Streptomyces sp. NBC_00557]
GTGACCACCACCGCAGACAGTGCCACCATCACCGCCCAGGACCGCTCCCAGGGCCGAGTCGAGGCGGTACACGTGATGAA
CGAAGCCACGAATCCCGAGGGACCCAAGCGCTCCCTGCCAGGCCGGCCTCCAGGCATCCGGGCCGACAGCTCCGGACTCA
CCGACCGGCAGCGCCGCGTGATCGAGGTCATCCGCGACTCCGTACAGCGGCGCGGTTACCCGCCGTCGATGCGGGAGATC
GGCCAGGCCGTCGGCCTCTCGAGCACCTCCTCGGTCGCGCACCAGCTGATGGCACTCGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGCCCGCGCGCGTACGAGGTGCGCGGCTCGGACCAGGCCGTGACCATGCAGCCCACGGACACCGCCGGCA
AGCCCGCCGCGTCGTACGTCCCGCTGGTCGGCCGTATCGCCGCCGGTGGCCCCATCCTCGCGGAGGAGTCCGTCGAGGAC
GTCTTCCCTCTCCCCCGCCAGCTCGTCGGCGACGGTGAACTCTTCGTCCTGAAGGTCGTCGGCGACTCCATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACCGTGCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTGGCCGCGATGCTCG
ACGGCGAAGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTCCTCCCGCACAACGCGGCCTACGAGCCG
ATCCCCGGCGACGACGCGACCATCCTGGGCAAGGTCGTCGCGGTGCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.445

81.467

0.378