Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG956_RS00430 Genome accession   NZ_CP107796
Coordinates   84646..85314 (+) Length   222 a.a.
NCBI ID   WP_330335894.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00557     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 79646..90314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG956_RS00400 (OG956_00390) - 80149..80364 (+) 216 WP_330335890.1 hypothetical protein -
  OG956_RS00405 (OG956_00395) - 80464..80619 (+) 156 WP_330335891.1 hypothetical protein -
  OG956_RS00410 (OG956_00400) - 81185..81886 (-) 702 WP_330342685.1 2-phosphosulfolactate phosphatase -
  OG956_RS00415 (OG956_00405) - 81906..82310 (-) 405 Protein_82 transposase -
  OG956_RS00420 (OG956_00410) - 82549..83337 (-) 789 WP_330335892.1 rhomboid-like protein -
  OG956_RS00425 (OG956_00415) - 83459..84649 (+) 1191 WP_330335893.1 sensor histidine kinase -
  OG956_RS00430 (OG956_00420) vraR 84646..85314 (+) 669 WP_330335894.1 response regulator transcription factor Regulator
  OG956_RS00435 (OG956_00425) - 86129..87610 (-) 1482 WP_330335895.1 sulfatase -
  OG956_RS00440 (OG956_00430) mscL 87963..88406 (-) 444 WP_330335896.1 large conductance mechanosensitive channel protein MscL -
  OG956_RS00445 (OG956_00435) - 88481..88654 (-) 174 WP_330335897.1 hypothetical protein -
  OG956_RS00450 (OG956_00440) - 88809..89054 (-) 246 Protein_89 hypothetical protein -
  OG956_RS00455 (OG956_00445) - 89150..89878 (-) 729 WP_330335898.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23981.77 Da        Isoelectric Point: 6.9941

>NTDB_id=646316 OG956_RS00430 WP_330335894.1 84646..85314(+) (vraR) [Streptomyces sp. NBC_00557]
MTVRVVVVDDETLVRAGFRVLIESENDLQVVGEAADGTQAVRVIRELRPDVALMDIRMPGLNGIEAIRTLLGGPSPVPVH
VLVLTTFDLDEYVFEALRAGAAGFLLKDTPPARLIDAVRVIATGESLLSPGVTRKLIETYVRRPGYPGPVTRTLDGVTGR
ERDVLGLIARGLSNHEIAAELYLTVGTVKTHVSHLLTKLRARDRAQLVIAAYESGLAGPARH

Nucleotide


Download         Length: 669 bp        

>NTDB_id=646316 OG956_RS00430 WP_330335894.1 84646..85314(+) (vraR) [Streptomyces sp. NBC_00557]
ATGACAGTGCGGGTCGTCGTGGTGGACGACGAGACGCTGGTGCGTGCCGGGTTCCGTGTGCTGATCGAGTCGGAAAACGA
TCTCCAGGTCGTCGGCGAGGCGGCCGACGGGACCCAGGCGGTCAGGGTGATCCGCGAACTGCGCCCCGATGTAGCCCTGA
TGGACATCCGGATGCCCGGGCTCAATGGCATCGAGGCCATCCGCACCCTGCTGGGCGGCCCGTCTCCCGTGCCCGTCCAC
GTCCTGGTGCTCACCACCTTCGACCTGGACGAGTACGTCTTCGAAGCGCTCCGCGCAGGCGCCGCGGGCTTCCTCCTCAA
GGACACTCCACCCGCGCGCTTGATCGACGCCGTGCGGGTGATCGCCACCGGGGAGTCGCTGCTGTCACCCGGCGTCACCC
GCAAGCTCATCGAGACCTACGTCCGCCGCCCCGGCTACCCCGGCCCGGTCACCCGCACCCTGGACGGTGTGACCGGCCGC
GAGCGGGACGTGCTGGGCTTGATCGCACGTGGCCTGTCCAACCACGAGATCGCAGCCGAGCTGTATCTGACCGTCGGCAC
GGTCAAGACCCACGTCAGCCATCTGCTGACGAAGCTCAGGGCCAGGGACCGGGCCCAACTCGTCATCGCCGCCTACGAAA
GCGGACTGGCAGGGCCCGCACGTCATTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-210)

Response regulator receiver domain (Response_reg)

(5-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.815

97.297

0.387
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

100

0.383