Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   L0961_RS12550 Genome accession   NZ_CP090905
Coordinates   2559716..2560483 (-) Length   255 a.a.
NCBI ID   WP_046559881.1    Uniprot ID   -
Organism   Bacillus velezensis strain Yao     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2554716..2565483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0961_RS12530 (L0961_12530) - 2554918..2555730 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  L0961_RS12535 (L0961_12535) ccpN 2555756..2556394 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  L0961_RS12540 (L0961_12540) glyS 2556495..2558534 (-) 2040 WP_003152986.1 glycine--tRNA ligase subunit beta -
  L0961_RS12545 (L0961_12545) glyQ 2558527..2559414 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  L0961_RS12550 (L0961_12550) recO 2559716..2560483 (-) 768 WP_046559881.1 DNA repair protein RecO Machinery gene
  L0961_RS12555 (L0961_12555) - 2560520..2560663 (-) 144 WP_007408286.1 YqzL family protein -
  L0961_RS12560 (L0961_12560) era 2560819..2561724 (-) 906 WP_003152978.1 GTPase Era -
  L0961_RS12565 (L0961_12565) - 2561705..2562115 (-) 411 WP_003152976.1 cytidine deaminase -
  L0961_RS12570 (L0961_12570) - 2562239..2562613 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  L0961_RS12575 (L0961_12575) ybeY 2562594..2563067 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  L0961_RS12580 (L0961_12580) - 2563068..2565200 (-) 2133 WP_234949399.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29263.92 Da        Isoelectric Point: 8.7950

>NTDB_id=646316 L0961_RS12550 WP_046559881.1 2559716..2560483(-) (recO) [Bacillus velezensis strain Yao]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQKTKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=646316 L0961_RS12550 WP_046559881.1 2559716..2560483(-) (recO) [Bacillus velezensis strain Yao]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACATTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGAAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89