Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA33_RS38550 Genome accession   NZ_CP107791
Coordinates   8644095..8644268 (-) Length   57 a.a.
NCBI ID   WP_330247977.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00562     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8639095..8649268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA33_RS38525 (OHA33_38605) - 8639563..8640447 (+) 885 WP_330247972.1 ABC transporter permease -
  OHA33_RS38530 (OHA33_38610) - 8640491..8641306 (+) 816 WP_330247973.1 ABC transporter permease -
  OHA33_RS38535 (OHA33_38615) - 8641323..8642951 (-) 1629 WP_330247974.1 IS200/IS605 family accessory protein TnpB-related protein -
  OHA33_RS38540 (OHA33_38620) - 8643093..8643608 (-) 516 WP_330247975.1 hypothetical protein -
  OHA33_RS38545 (OHA33_38625) - 8643728..8644048 (-) 321 WP_330247976.1 nuclear transport factor 2 family protein -
  OHA33_RS38550 vraR 8644095..8644268 (-) 174 WP_330247977.1 LuxR C-terminal-related transcriptional regulator Regulator
  OHA33_RS38555 (OHA33_38630) - 8644241..8644558 (-) 318 WP_330247978.1 response regulator -
  OHA33_RS38560 (OHA33_38635) - 8644555..8645709 (-) 1155 WP_330247979.1 histidine kinase -
  OHA33_RS38565 (OHA33_38640) - 8645858..8646226 (+) 369 WP_330247980.1 hypothetical protein -
  OHA33_RS38570 (OHA33_38645) - 8647245..8648024 (+) 780 WP_330249091.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 57 a.a.        Molecular weight: 5895.84 Da        Isoelectric Point: 10.6083

>NTDB_id=646310 OHA33_RS38550 WP_330247977.1 8644095..8644268(-) (vraR) [Streptomyces sp. NBC_00562]
MLRLLARGLTNADIASALGMTEGTVKGHVSSILAKLGADSRVKAARIAYRAGLDDQA

Nucleotide


Download         Length: 174 bp        

>NTDB_id=646310 OHA33_RS38550 WP_330247977.1 8644095..8644268(-) (vraR) [Streptomyces sp. NBC_00562]
GTGCTGCGGCTGCTCGCACGCGGGCTGACCAATGCCGACATCGCCTCCGCGCTCGGTATGACCGAGGGCACGGTCAAGGG
CCACGTCAGCAGCATCCTCGCGAAGCTGGGTGCGGACAGCCGCGTCAAGGCCGCGCGGATCGCCTATCGTGCGGGGCTCG
ACGACCAGGCATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(1-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.283

92.982

0.421
  degU Bacillus subtilis subsp. subtilis str. 168

40.385

91.228

0.368