Detailed information NTG0646278

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: L0961_RS01950
• Genome accession: NZ_CP090905
• Coordinates: 383444..384592 (+)
• Length: 382 a.a.
• NCBI ID: WP_014304340.1
• Uniprot ID: I2C1C2
• Organism: Bacillus velezensis strain Yao
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 378444..389592

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L0961_RS01930 (L0961_01930)	-	378841..379524 (-)	684	WP_015388709.1	ABC transporter ATP-binding protein	-
L0961_RS01935 (L0961_01935)	-	379539..380975 (-)	1437	WP_234949556.1	ABC transporter permease	-
L0961_RS01940 (L0961_01940)	-	381188..381871 (+)	684	WP_015388707.1	response regulator transcription factor	-
L0961_RS01945 (L0961_01945)	-	381858..383291 (+)	1434	WP_161620115.1	sensor histidine kinase	-
L0961_RS01950 (L0961_01950)	rapC	383444..384592 (+)	1149	WP_014304340.1	Rap family tetratricopeptide repeat protein	Regulator
L0961_RS01955 (L0961_01955)	phrC	384576..384695 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
L0961_RS01960 (L0961_01960)	-	384845..384955 (-)	111	WP_369719092.1	YjcZ family sporulation protein	-
L0961_RS01965 (L0961_01965)	-	385035..386399 (-)	1365	WP_014304341.1	aspartate kinase	-
L0961_RS01970 (L0961_01970)	ceuB	386814..387767 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
L0961_RS01975 (L0961_01975)	-	387757..388704 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
L0961_RS01980 (L0961_01980)	-	388698..389456 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45494.75 Da
• Isoelectric Point: 4.9939

>NTDB_id=646278 L0961_RS01950 WP_014304340.1 383444..384592(+) (rapC) [Bacillus velezensis strain Yao]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=646278 L0961_RS01950 WP_014304340.1 383444..384592(+) (rapC) [Bacillus velezensis strain Yao]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTCGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

3D structure

• AlphaFold DB: I2C1C2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568