Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA33_RS01970 Genome accession   NZ_CP107791
Coordinates   404134..404769 (-) Length   211 a.a.
NCBI ID   WP_330242935.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00562     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 399134..409769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA33_RS01950 (OHA33_01950) - 399708..400451 (+) 744 WP_330248743.1 DUF3626 domain-containing protein -
  OHA33_RS01955 (OHA33_01955) - 400664..401395 (-) 732 WP_330242933.1 HAD family hydrolase -
  OHA33_RS01960 (OHA33_01960) - 401747..402376 (+) 630 WP_330242934.1 TetR family transcriptional regulator -
  OHA33_RS01965 (OHA33_01965) - 402454..404043 (+) 1590 WP_330248744.1 FAD-dependent monooxygenase -
  OHA33_RS01970 (OHA33_01970) vraR 404134..404769 (-) 636 WP_330242935.1 response regulator transcription factor Regulator
  OHA33_RS01975 (OHA33_01975) - 404766..405986 (-) 1221 WP_330242936.1 sensor histidine kinase -
  OHA33_RS01980 (OHA33_01980) - 406157..407245 (+) 1089 WP_330248745.1 ABC transporter permease -
  OHA33_RS01985 (OHA33_01985) - 407242..407925 (+) 684 WP_330242937.1 ABC transporter ATP-binding protein -
  OHA33_RS01990 (OHA33_01990) - 408065..408406 (+) 342 WP_330242938.1 hypothetical protein -
  OHA33_RS01995 (OHA33_01995) - 408776..409144 (-) 369 WP_330242939.1 PPOX class F420-dependent oxidoreductase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22105.38 Da        Isoelectric Point: 6.2553

>NTDB_id=646234 OHA33_RS01970 WP_330242935.1 404134..404769(-) (vraR) [Streptomyces sp. NBC_00562]
MTDTPIRLLLADDHPVVRAGLRAVLETEAGIEVVAEAPTAEVAVARAAQGDIDVVLMDLQFGKGMNGAEATAAITARPQA
PRVLIVTTYDTDADTLRAIEAGATGYLLKDAPPEDLAAAVRTAAAGRTTLAPTVADRLMNRLRTPGTTLTRRETEVLALV
AVGLSNQAIGNRLHLTEGTVKSHLARIYVKLGVDSRTAAVATAAELGLIRR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=646234 OHA33_RS01970 WP_330242935.1 404134..404769(-) (vraR) [Streptomyces sp. NBC_00562]
GTGACCGACACCCCCATCCGCCTGCTCCTGGCCGACGACCACCCCGTCGTGCGGGCAGGGCTGCGCGCCGTGCTGGAGAC
CGAAGCCGGTATCGAAGTGGTGGCCGAAGCCCCAACCGCCGAGGTCGCCGTCGCCCGCGCCGCCCAGGGCGACATCGATG
TCGTCCTCATGGACCTTCAGTTCGGCAAGGGAATGAACGGCGCCGAGGCCACCGCCGCCATCACCGCACGCCCTCAAGCC
CCCCGCGTGCTGATCGTCACCACCTACGACACCGACGCCGACACCCTCCGCGCCATCGAAGCCGGCGCCACCGGCTACCT
CCTCAAGGACGCCCCACCCGAAGACCTGGCCGCCGCCGTACGCACCGCCGCGGCAGGCCGCACCACACTGGCACCCACCG
TCGCGGACCGGCTGATGAACCGACTGCGTACTCCCGGCACCACCCTGACTCGGCGCGAGACCGAAGTTCTCGCACTGGTC
GCCGTAGGCCTGTCCAACCAGGCCATCGGCAACCGGCTCCACCTCACCGAAGGAACGGTCAAGTCCCACCTGGCCCGTAT
CTACGTCAAACTCGGCGTCGACTCCCGCACCGCTGCCGTCGCCACCGCCGCCGAACTCGGCCTCATCCGGCGATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(9-120)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.462

98.578

0.379
  degU Bacillus subtilis subsp. subtilis str. 168

33.628

100

0.36