Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG812_RS26245 Genome accession   NZ_CP107784
Coordinates   5631046..5631699 (-) Length   217 a.a.
NCBI ID   WP_330236936.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00566     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5626046..5636699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG812_RS26225 (OG812_26230) - 5627001..5627774 (-) 774 WP_329009370.1 alpha/beta hydrolase -
  OG812_RS26230 (OG812_26235) - 5627926..5628813 (+) 888 WP_329009368.1 RNA polymerase sigma-70 factor -
  OG812_RS26235 (OG812_26240) - 5628996..5629754 (+) 759 WP_329009366.1 GntR family transcriptional regulator -
  OG812_RS26240 (OG812_26245) - 5629819..5630970 (-) 1152 WP_329009364.1 ROK family transcriptional regulator -
  OG812_RS26245 (OG812_26250) vraR 5631046..5631699 (-) 654 WP_330236936.1 response regulator transcription factor Regulator
  OG812_RS26250 (OG812_26255) - 5631733..5632887 (-) 1155 WP_330236937.1 histidine kinase -
  OG812_RS26255 (OG812_26260) - 5632995..5633915 (+) 921 WP_330236938.1 ATP-binding cassette domain-containing protein -
  OG812_RS26260 (OG812_26265) - 5633918..5634628 (+) 711 WP_330236939.1 ABC transporter permease -
  OG812_RS26265 (OG812_26270) - 5634670..5635056 (+) 387 WP_330236940.1 hypothetical protein -
  OG812_RS26270 (OG812_26275) mug 5635257..5635799 (-) 543 WP_329019510.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23045.71 Da        Isoelectric Point: 5.4077

>NTDB_id=646230 OG812_RS26245 WP_330236936.1 5631046..5631699(-) (vraR) [Streptomyces sp. NBC_00566]
MPVTVLLVDDEPLVRAGLRAVLGAQPDIEVVGEAADGAAVIPLVRSLRPDVVAMDVRMPLLDGIEATRAVLRTVPDPPKI
LVVTTFEDDEYVYEALRAGADGFLLKRSRPEEIVHAVRLVAAGDSLLFPASVRQLAARYAGGRAAGEPLSAARLTEREAE
VLRLMARGLTNAEIAARLVLGAETVKSHVSAVLAKLGARDRTQAVIAAYESGFVAPR

Nucleotide


Download         Length: 654 bp        

>NTDB_id=646230 OG812_RS26245 WP_330236936.1 5631046..5631699(-) (vraR) [Streptomyces sp. NBC_00566]
ATGCCGGTCACCGTACTTCTCGTCGACGACGAACCCCTGGTCCGCGCCGGTCTGCGGGCCGTCCTGGGGGCGCAGCCCGA
CATCGAGGTGGTCGGCGAGGCGGCCGACGGTGCCGCCGTCATCCCGCTGGTGCGGAGCCTGCGGCCGGACGTGGTGGCGA
TGGACGTCCGGATGCCGCTGCTGGACGGCATCGAGGCCACCCGCGCGGTACTGCGCACGGTGCCCGACCCGCCCAAGATC
CTGGTCGTGACCACCTTCGAGGACGACGAGTACGTGTACGAGGCGCTGCGCGCCGGCGCGGACGGGTTCCTGCTGAAGCG
GTCCCGGCCGGAGGAGATCGTGCACGCGGTACGCCTGGTCGCGGCGGGCGATTCGCTGCTGTTCCCCGCCTCCGTACGGC
AGTTGGCCGCCCGGTACGCCGGTGGCCGGGCGGCCGGGGAGCCGCTGTCGGCGGCCCGGCTGACCGAGCGCGAGGCGGAG
GTGCTGCGGCTGATGGCGCGGGGGCTGACCAACGCGGAGATCGCGGCGCGGCTGGTCCTCGGGGCGGAGACGGTGAAGTC
CCATGTGAGCGCCGTACTGGCCAAGTTGGGTGCGCGCGACCGCACCCAGGCGGTGATCGCCGCCTACGAGTCGGGTTTCG
TCGCACCCCGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(154-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.121

98.618

0.406
  degU Bacillus subtilis subsp. subtilis str. 168

36.123

100

0.378