Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG812_RS23710 Genome accession   NZ_CP107784
Coordinates   5096347..5096988 (+) Length   213 a.a.
NCBI ID   WP_329010071.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00566     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5091347..5101988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG812_RS23695 (OG812_23695) - 5091365..5093881 (+) 2517 WP_329010074.1 FHA domain-containing protein -
  OG812_RS23700 (OG812_23700) - 5093966..5094703 (-) 738 WP_329010073.1 transglycosylase SLT domain-containing protein -
  OG812_RS23705 (OG812_23705) - 5095209..5096354 (+) 1146 WP_329010072.1 GAF domain-containing sensor histidine kinase -
  OG812_RS23710 (OG812_23710) vraR 5096347..5096988 (+) 642 WP_329010071.1 response regulator transcription factor Regulator
  OG812_RS23715 (OG812_23715) - 5096995..5097783 (-) 789 WP_329010070.1 hypothetical protein -
  OG812_RS23720 (OG812_23720) - 5097934..5098725 (+) 792 WP_217461502.1 ABC transporter ATP-binding protein -
  OG812_RS23725 (OG812_23725) - 5098799..5099230 (+) 432 WP_161148239.1 NfeD family protein -
  OG812_RS23730 (OG812_23730) - 5099379..5100332 (+) 954 WP_329010069.1 SPFH domain-containing protein -
  OG812_RS23735 (OG812_23735) - 5100402..5100911 (-) 510 WP_329010068.1 HNH endonuclease -
  OG812_RS23740 (OG812_23740) - 5101056..5101595 (-) 540 WP_330236738.1 YbhB/YbcL family Raf kinase inhibitor-like protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23007.30 Da        Isoelectric Point: 5.6857

>NTDB_id=646226 OG812_RS23710 WP_329010071.1 5096347..5096988(+) (vraR) [Streptomyces sp. NBC_00566]
MAEPIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVARAEELRPGVVLMDVRMPGMDGIDALRKLRELGNPAR
VLIVTSFTERRTVVPALRAGAAGYVYKDVDPDALAAAIRSVHAGHILLQPEVADALLTQEGTNSGQGRGGSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHEASG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=646226 OG812_RS23710 WP_329010071.1 5096347..5096988(+) (vraR) [Streptomyces sp. NBC_00566]
GTGGCTGAGCCGATCAGGGTGCTGCTCGTCGACGACCACCAGGTCGTCCGCCGTGGCCTGCGCACCTTCCTGGAGGTGCA
GGACGACATCGAGGTCGTCGGCGAGGCCGCCGACGGCGCCGAGGGAGTCGCCCGCGCCGAGGAGCTGAGGCCCGGCGTGG
TGCTGATGGACGTCCGCATGCCGGGCATGGACGGCATCGACGCCCTGCGCAAGCTCCGTGAACTCGGCAACCCCGCCCGC
GTGCTGATCGTCACCAGCTTCACCGAGCGCCGCACCGTCGTCCCCGCCCTGCGCGCGGGCGCCGCCGGGTACGTCTACAA
GGACGTGGACCCCGACGCCCTGGCCGCCGCCATCCGCTCCGTGCACGCCGGCCACATCCTGCTCCAGCCCGAGGTGGCCG
ACGCACTCCTCACCCAGGAGGGCACCAACTCGGGTCAGGGAAGAGGGGGTTCACTCACCGAGCGGGAGCGTGAGGTGCTC
GGGCTCATCGCCGACGGACGCTCCAACCGGGAGATAGCCCGCGCCCTGGTGCTCTCCGAGAAGACCGTCAAGACGCACGT
CTCCAACATCCTGATGAAACTCGACCTCGCCGACCGCACCCAGGCCGCGCTGTGGGCCGTACGCCACGAGGCGAGCGGCT
GA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.192

97.653

0.441
  degU Bacillus subtilis subsp. subtilis str. 168

37.273

100

0.385