Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   L0U97_RS13720 Genome accession   NZ_CP090890
Coordinates   2903634..2904101 (-) Length   155 a.a.
NCBI ID   WP_099948003.1    Uniprot ID   -
Organism   Acinetobacter junii strain WCO-9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2898634..2909101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0U97_RS13690 - 2899737..2900711 (+) 975 WP_004951625.1 lipase family alpha/beta hydrolase -
  L0U97_RS13695 rplS 2900773..2901144 (-) 372 WP_004660214.1 50S ribosomal protein L19 -
  L0U97_RS13700 trmD 2901375..2902115 (-) 741 WP_234856540.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  L0U97_RS13705 rimM 2902158..2902706 (-) 549 WP_161418489.1 ribosome maturation factor RimM -
  L0U97_RS13710 rpsP 2902723..2902980 (-) 258 WP_004964546.1 30S ribosomal protein S16 -
  L0U97_RS13715 - 2903197..2903640 (-) 444 WP_099948004.1 type IV pilin protein -
  L0U97_RS13720 comE 2903634..2904101 (-) 468 WP_099948003.1 type IV pilin protein Machinery gene
  L0U97_RS13725 - 2904109..2907801 (-) 3693 WP_234856541.1 hypothetical protein -
  L0U97_RS13730 - 2907815..2908594 (-) 780 WP_099948001.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16795.19 Da        Isoelectric Point: 9.6568

>NTDB_id=646208 L0U97_RS13720 WP_099948003.1 2903634..2904101(-) (comE) [Acinetobacter junii strain WCO-9]
MNKNDGFTLIELMVVLIIIAIIAAIAIPSYQSYARRALAAQMQQEMQRISVLLERHKARNFSYKGFDLSTQGVVAPRTYS
FDLKDAATTTTAAKGSGNGKLLSATDASGRSWVLYGITSDAQNYNFLMTSTGLRCKNKTAANVVSTGCGTGEEPW

Nucleotide


Download         Length: 468 bp        

>NTDB_id=646208 L0U97_RS13720 WP_099948003.1 2903634..2904101(-) (comE) [Acinetobacter junii strain WCO-9]
ATGAACAAAAATGATGGTTTCACCCTGATTGAATTGATGGTAGTTCTTATAATTATTGCGATCATAGCTGCCATCGCAAT
ACCCTCATATCAATCTTATGCTCGACGTGCGCTTGCTGCTCAAATGCAGCAAGAAATGCAACGTATCTCTGTGCTACTAG
AGCGTCATAAAGCACGTAATTTTAGTTACAAGGGCTTCGATCTATCTACTCAAGGTGTTGTTGCACCTCGAACTTATAGC
TTTGATCTAAAGGATGCTGCTACTACTACTACAGCAGCCAAAGGCTCAGGTAATGGTAAATTACTTTCAGCTACTGATGC
CTCAGGACGTTCTTGGGTTTTATATGGAATAACTTCTGATGCTCAAAACTATAACTTTCTAATGACGAGTACTGGCTTAC
GTTGTAAAAATAAAACAGCTGCGAATGTAGTCTCGACAGGATGTGGTACGGGAGAGGAGCCATGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

45.783

100

0.49
  pilY2 Acinetobacter baumannii D1279779

41.875

100

0.432