Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   L0U97_RS13380 Genome accession   NZ_CP090890
Coordinates   2836075..2836734 (+) Length   219 a.a.
NCBI ID   WP_129261571.1    Uniprot ID   A0AAX1MJ68
Organism   Acinetobacter junii strain WCO-9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2831075..2841734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0U97_RS13365 - 2832094..2833074 (-) 981 WP_004951756.1 putative solute-binding protein -
  L0U97_RS13370 - 2833199..2834017 (-) 819 WP_234856512.1 NAD-dependent epimerase/dehydratase family protein -
  L0U97_RS13375 recG 2834037..2836082 (+) 2046 WP_234856513.1 ATP-dependent DNA helicase RecG -
  L0U97_RS13380 comF 2836075..2836734 (+) 660 WP_129261571.1 ComF family protein Machinery gene
  L0U97_RS13385 - 2836724..2837110 (-) 387 WP_004909413.1 NUDIX hydrolase -
  L0U97_RS13390 - 2837120..2837704 (-) 585 WP_125299073.1 TIGR00730 family Rossman fold protein -
  L0U97_RS13395 - 2837855..2838868 (+) 1014 WP_004909415.1 magnesium and cobalt transport protein CorA -
  L0U97_RS13400 - 2838870..2839397 (+) 528 WP_234856514.1 hypothetical protein -
  L0U97_RS13405 - 2839452..2839739 (-) 288 WP_004964385.1 STAS domain-containing protein -
  L0U97_RS13410 - 2839751..2840383 (-) 633 WP_004909421.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  L0U97_RS13415 - 2840403..2841077 (-) 675 WP_234856515.1 outer membrane lipid asymmetry maintenance protein MlaD -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25034.27 Da        Isoelectric Point: 8.7948

>NTDB_id=646207 L0U97_RS13380 WP_129261571.1 2836075..2836734(+) (comF) [Acinetobacter junii strain WCO-9]
MFKLLSRGAQQVADYFTACHLCDIGVRAQYGVCQSCWQQLPWLKHKIERHQQDILIACHYEYPISQLIQQFKYEQQLHHL
RLLSGLLLELKLPKVHAIVPMPISNDRLMERGFNQSLLIAKELSKVLNIPVWQPVQRLAQHSQKGLSRLERLENIEDQFV
AKTHLQLIYRKVLIIDDVVTTGSSINALSQVLKQLGCQHIYSACLAAGGVKQANHDVIA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=646207 L0U97_RS13380 WP_129261571.1 2836075..2836734(+) (comF) [Acinetobacter junii strain WCO-9]
ATGTTTAAATTATTGAGCCGAGGAGCACAACAAGTTGCTGATTATTTCACAGCATGTCACTTATGCGATATTGGTGTCAG
AGCACAATATGGTGTTTGTCAAAGTTGCTGGCAACAATTACCATGGTTAAAACATAAAATCGAACGACATCAGCAAGATA
TACTTATTGCCTGTCATTATGAATATCCGATCAGCCAACTCATTCAACAATTTAAATACGAGCAACAGTTACATCATCTT
CGATTACTTAGCGGACTATTACTGGAACTTAAGCTGCCAAAAGTACATGCCATCGTACCAATGCCTATTTCAAATGATCG
ACTGATGGAAAGAGGTTTCAATCAATCACTTTTAATCGCTAAGGAACTGAGCAAAGTATTGAATATTCCAGTATGGCAGC
CCGTGCAACGACTAGCCCAACATTCTCAAAAAGGTTTAAGCCGCTTAGAGCGACTGGAAAATATAGAAGATCAATTTGTC
GCTAAAACACATCTTCAATTGATTTATAGAAAAGTGCTGATTATTGATGATGTCGTGACCACAGGCAGCTCTATCAATGC
CCTCAGTCAAGTATTAAAACAGTTGGGGTGCCAACATATATACTCAGCCTGTTTAGCCGCTGGTGGTGTTAAACAGGCAA
ATCATGATGTTATTGCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

64.115

95.434

0.612
  comF Acinetobacter baumannii D1279779

63.636

95.434

0.607