Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG812_RS14035 Genome accession   NZ_CP107784
Coordinates   3027611..3028210 (-) Length   199 a.a.
NCBI ID   WP_161148711.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00566     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3022611..3033210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG812_RS14015 (OG812_14005) - 3023425..3024009 (-) 585 WP_330237393.1 SigE family RNA polymerase sigma factor -
  OG812_RS14020 (OG812_14010) - 3024455..3025513 (-) 1059 WP_330235818.1 aspartate-semialdehyde dehydrogenase -
  OG812_RS14025 (OG812_14015) - 3025513..3026790 (-) 1278 WP_161148706.1 aspartate kinase -
  OG812_RS14030 (OG812_14020) - 3026959..3027618 (-) 660 WP_329013204.1 DUF5063 domain-containing protein -
  OG812_RS14035 (OG812_14025) recR 3027611..3028210 (-) 600 WP_161148711.1 recombination mediator RecR Machinery gene
  OG812_RS14040 (OG812_14030) - 3028263..3028604 (-) 342 WP_217464997.1 YbaB/EbfC family nucleoid-associated protein -
  OG812_RS14045 (OG812_14035) - 3029312..3030112 (+) 801 WP_330235819.1 SLATT domain-containing protein -
  OG812_RS14050 (OG812_14040) - 3030127..3031872 (-) 1746 WP_330235820.1 protein kinase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21732.12 Da        Isoelectric Point: 4.9909

>NTDB_id=646206 OG812_RS14035 WP_161148711.1 3027611..3028210(-) (recR) [Streptomyces sp. NBC_00566]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHVLQAEPTDVKRLAQALLEVKAKVRFCAACGNVAQEELCNICRDPRRDLSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=646206 OG812_RS14035 WP_161148711.1 3027611..3028210(-) (recR) [Streptomyces sp. NBC_00566]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGGCGGCTCCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACGTCCTCCAGGCCGAGCCGACGGACGTCAAGCGGCTCGCTCAGGCCCTGCTGGAGGTCAAGGCCAAGGTCC
GCTTCTGCGCGGCCTGCGGCAACGTCGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCTCTCGGTC
ATCTGCGTGGTCGAGGAGCCCAAGGACGTCGTGGCCATCGAGCGCACCCGTGAGTTCCGGGGCCGCTACCACGTCCTGGG
CGGCGCCATCAGCCCCATCGAGGGCGTCGGCCCGGACGACCTGCGGATCAGGGAACTCCTGGCCCGCCTCGCCGACGGCA
CCGTCACGGAGCTGATCCTCGCCACCGACCCCAATCTCGAAGGCGAGGCCACGGCGACGTACCTCGCCCGCATGATCAAG
CCCATGGGTCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTCGGCGGGGACCTGGAATACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462