Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG812_RS13190 Genome accession   NZ_CP107784
Coordinates   2839547..2840956 (+) Length   469 a.a.
NCBI ID   WP_330235738.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00566     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2834547..2845956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG812_RS13170 (OG812_13160) - 2834872..2835684 (-) 813 WP_330235735.1 sugar phosphate isomerase/epimerase -
  OG812_RS13175 (OG812_13165) - 2835761..2836693 (-) 933 WP_330235736.1 Ppx/GppA phosphatase family protein -
  OG812_RS13180 (OG812_13170) - 2836765..2837583 (+) 819 WP_329013500.1 hypothetical protein -
  OG812_RS13185 (OG812_13175) - 2837591..2839303 (-) 1713 WP_330235737.1 hypothetical protein -
  OG812_RS13190 (OG812_13180) radA/sms 2839547..2840956 (+) 1410 WP_330235738.1 DNA repair protein RadA Machinery gene
  OG812_RS13195 (OG812_13185) disA 2841037..2842161 (+) 1125 WP_161147461.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG812_RS13200 (OG812_13190) - 2842307..2843125 (-) 819 WP_330235739.1 hypothetical protein -
  OG812_RS13205 (OG812_13195) - 2843307..2844182 (+) 876 WP_217465153.1 A/G-specific adenine glycosylase -
  OG812_RS13210 (OG812_13200) - 2844456..2844995 (+) 540 WP_217465152.1 SigE family RNA polymerase sigma factor -
  OG812_RS13215 (OG812_13205) - 2845031..2845636 (+) 606 WP_329013489.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49623.79 Da        Isoelectric Point: 8.2515

>NTDB_id=646201 OG812_RS13190 WP_330235738.1 2839547..2840956(+) (radA/sms) [Streptomyces sp. NBC_00566]
MATRTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTSSALPIGQVDGRQATARTTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASEEHKTLYVTGEESASQVRMRADRIRALDDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTIASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAARLGFTHALVPGDPGKVPAGMKVVEVADVGDALRVLPRSRRREAPRETEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=646201 OG812_RS13190 WP_330235738.1 2839547..2840956(+) (radA/sms) [Streptomyces sp. NBC_00566]
ATGGCCACCCGTACCAAGACCGCCAAGGACCGTCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGGCTCCCGGCC
GCGTCACCAGCTCCGCCCTGCCCATCGGCCAGGTCGACGGCCGCCAGGCCACCGCCCGCACCACCGGCGTCCCGGAGCTG
GACCGGGTGCTCGGCGGCGGACTCGTACCCGGCGCGGTGGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCT
GCTGCTCGACGTGGCGGCGAAGTCGGCGAGCGAGGAGCACAAGACCCTCTATGTGACCGGCGAGGAGTCCGCGAGCCAGG
TCCGGATGCGCGCCGACCGCATCCGCGCCCTGGACGACCACCTCTATCTGGCCGCCGAGACCGATCTGTCCGCCGTCCTC
GGCCACTTGGACGCGGTCAAGCCCTCCCTGCTGATCCTGGACTCGGTGCAGACGATCGCCTCCCCCGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTCCGCGAGGTGGCCGGCGCCCTGATCCGCGCCTCCAAGGAACGCGGCATGTCCACCCTGC
TGGTGGGCCACGTCACCAAGGACGGTGCCATCGCGGGCCCCCGCCTGCTGGAGCACCTGGTCGACGTCGTACTGAGCTTC
GAGGGCGACCGGCACGCCCGGCTGCGCCTGGTGCGCGGCGTGAAGAACCGGTACGGGGCGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCAGCGGCCTGTTCCTGACCCGGCGTGCCGAGCCGGTGCCCG
GCACCTGTCTGACGGTGACGCTGGAGGGGCGCCGTCCGCTGGTGGCCGAGGTGCAGGCGCTGACCGTGGACTCCCAGATC
CCCTCCCCCCGCCGCACCACCTCGGGCCTGGAGACCTCCCGTGTCTCGATGATGCTGGCGGTGCTGGAGCAGCGCGGCCG
GATCAGCGCGCTCGGCAAGCGGGACATCTACTCCGCGACCGTGGGCGGGGTGAAGCTGTCCGAACCCGCGGCCGACCTGG
CCATCGCGCTGGCGCTCGCCTCGGCGGCCAGCGACACCCCGCTGCCGAAGAATCTGGTCGCCATCGGTGAGGTGGGTCTC
GCCGGCGAGGTCAGACGCGTCACAGGCGTGCAGCGCAGGCTCTCGGAAGCGGCCCGGCTGGGCTTCACGCACGCGCTCGT
GCCGGGCGATCCGGGCAAGGTCCCGGCCGGGATGAAGGTCGTGGAGGTCGCCGACGTGGGCGACGCGCTGCGGGTGCTGC
CCCGCTCCCGTCGCCGAGAGGCCCCGCGGGAGACGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

96.588

0.42
  radA Streptococcus mitis SK321

42.605

96.588

0.412
  radA Streptococcus mitis NCTC 12261

42.605

96.588

0.412
  radA Streptococcus pneumoniae Rx1

42.667

95.949

0.409
  radA Streptococcus pneumoniae TIGR4

42.667

95.949

0.409
  radA Streptococcus pneumoniae D39

42.667

95.949

0.409
  radA Streptococcus pneumoniae R6

42.667

95.949

0.409