Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   L0U97_RS01310 Genome accession   NZ_CP090890
Coordinates   277728..279293 (-) Length   521 a.a.
NCBI ID   WP_168154121.1    Uniprot ID   A0A8I0S2J3
Organism   Acinetobacter junii strain WCO-9     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 272728..284293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0U97_RS01295 gpmI 273507..275051 (+) 1545 WP_099949328.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  L0U97_RS01300 - 275061..276236 (+) 1176 WP_004917024.1 S41 family peptidase -
  L0U97_RS01305 pilR 276275..277705 (-) 1431 WP_234856764.1 sigma-54-dependent transcriptional regulator Regulator
  L0U97_RS01310 pilS 277728..279293 (-) 1566 WP_168154121.1 sensor histidine kinase Regulator
  L0U97_RS01315 - 279309..279944 (-) 636 WP_004957336.1 response regulator -
  L0U97_RS01320 pbpG 280156..281217 (+) 1062 WP_125297253.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  L0U97_RS01325 - 281382..281995 (+) 614 Protein_248 DUF6915 family protein -
  L0U97_RS01330 - 282019..282798 (+) 780 WP_234856765.1 hypothetical protein -
  L0U97_RS01335 thrC 282865..284004 (-) 1140 WP_002048893.1 threonine synthase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59250.23 Da        Isoelectric Point: 6.5633

>NTDB_id=646184 L0U97_RS01310 WP_168154121.1 277728..279293(-) (pilS) [Acinetobacter junii strain WCO-9]
MLGKIASSVSQTVYKLGIWYSGYRLIISISLLLIYLLTAEQLASDYDYPFLYFYTLICFIAFSIFQLFLLKILPVQVTKQ
LILIFLIDVICLALITFSAGGPNLQLSLLYVIVIFSSAILLNSQLSLIVTLFAVIMVVYQRFIGDFFNYNNLNHLSNSIF
LAFLFFVVHAIGRIAVQRFKILETLTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLSNPAANTLLGINVPVSTE
KTPLIKWQPDLFELIKFSELKDGEEFSFESQLSPYTVNVRVKHLIVPEQPLFLLILKDAQKLTQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKGSDIHQQDMLSRMISKQAKRIDSIIQDTLGMARNKPTEPQIIQLTEFFETLLNEDLADVK
SKIQLSLPENLAILFDEKQLRQVLINLIRNAIRHNAPEAEYIEVNIHLNDGRTRIDVIDFGTGVAKRDISQLFKPFFSTE
IKGTGLGLYLSHSFCEANHAKLNYIEQQQGACFRIECSKIH

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=646184 L0U97_RS01310 WP_168154121.1 277728..279293(-) (pilS) [Acinetobacter junii strain WCO-9]
ATGCTGGGCAAAATAGCCTCTTCCGTCTCCCAAACCGTCTATAAGCTTGGTATTTGGTATAGTGGATATCGGCTGATTAT
CTCTATCAGCCTTTTGCTCATTTATTTATTAACGGCTGAGCAATTAGCCTCAGACTATGATTACCCTTTTTTATATTTCT
ATACACTGATTTGCTTTATTGCATTTAGTATTTTCCAGCTTTTTTTACTCAAAATACTTCCAGTACAAGTCACTAAACAG
CTCATTTTAATTTTTCTTATTGATGTGATTTGTTTAGCGTTGATTACTTTCTCTGCGGGGGGGCCAAACTTACAATTAAG
TTTGCTATACGTAATCGTAATCTTTTCTTCTGCAATTCTACTAAACTCTCAGCTCTCGCTGATCGTGACACTTTTTGCTG
TCATTATGGTGGTTTATCAACGTTTTATTGGCGATTTCTTTAACTACAATAACTTAAATCATTTAAGTAATAGTATCTTT
CTCGCTTTTTTATTCTTTGTTGTGCATGCGATTGGACGTATTGCAGTACAACGTTTTAAAATTTTAGAGACGTTGACATT
CCATCAATCCATAGAGATTCATCAACTTCAAAATATCAACCGCTACATCCTTGAACAGATTGAAGATGGTTATCTCGTTC
TAGATGAAAGTAACCATATTGTTTTAAGTAATCCTGCTGCCAATACTTTACTTGGAATTAATGTACCTGTTTCTACTGAG
AAAACACCTTTAATAAAATGGCAACCTGATCTTTTTGAGCTGATCAAATTTAGTGAGCTAAAAGATGGTGAGGAATTTAG
TTTTGAATCACAACTTAGCCCATACACGGTCAATGTTCGAGTCAAACATTTAATTGTTCCTGAACAGCCCCTATTCTTAT
TGATCCTGAAAGATGCCCAAAAACTTACTCAACAGGTTCAACAATTAAAATTGGCGGCTTTAGGACAACTTTCTGCAAGT
ATTGCACACGAAATCAGAAATCCACTTGCAGCTATTGTACAAGCCAATGAATTACTTAAGGGTAGCGATATCCATCAGCA
AGACATGCTATCTCGAATGATTAGCAAACAGGCAAAAAGGATCGATAGCATCATTCAAGATACTTTGGGAATGGCACGCA
ATAAACCTACTGAACCACAAATTATTCAATTAACAGAATTTTTTGAAACATTATTAAATGAAGATTTAGCAGATGTTAAA
TCTAAGATCCAACTCAGTTTGCCTGAAAATTTAGCAATCCTGTTTGATGAAAAACAATTAAGACAAGTGTTAATCAATCT
TATTCGTAATGCTATAAGACACAATGCACCTGAAGCAGAATATATTGAAGTGAATATTCATCTAAATGATGGTCGCACCC
GAATAGATGTGATTGATTTTGGTACAGGCGTTGCAAAAAGAGATATTTCTCAGTTATTCAAACCATTTTTTAGTACCGAA
ATTAAAGGAACTGGTTTAGGATTGTACTTGTCTCATAGTTTTTGTGAGGCAAATCATGCAAAGCTCAATTATATAGAGCA
ACAACAAGGAGCATGTTTCAGGATTGAATGCTCAAAAATTCATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

65.698

99.04

0.651