Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   L1A13_RS10335 Genome accession   NZ_CP090889
Coordinates   2002601..2003359 (+) Length   252 a.a.
NCBI ID   WP_000410383.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain CH2439     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1997601..2008359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A13_RS10305 (L1A13_10305) comE 1998197..1998949 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  L1A13_RS10310 (L1A13_10310) comD/comD1 1998946..2000271 (-) 1326 WP_014632435.1 competence system sensor histidine kinase ComD Regulator
  L1A13_RS10315 (L1A13_10315) comC/comC1 2000292..2000417 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  L1A13_RS10325 (L1A13_10325) rlmH 2000700..2001179 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  L1A13_RS10330 (L1A13_10330) htrA 2001362..2002543 (+) 1182 WP_000681597.1 trypsin-like peptidase domain-containing protein Regulator
  L1A13_RS10335 (L1A13_10335) spo0J 2002601..2003359 (+) 759 WP_000410383.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29183.53 Da        Isoelectric Point: 9.0667

>NTDB_id=646172 L1A13_RS10335 WP_000410383.1 2002601..2003359(+) (spo0J) [Streptococcus pneumoniae strain CH2439]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=646172 L1A13_RS10335 WP_000410383.1 2002601..2003359(+) (spo0J) [Streptococcus pneumoniae strain CH2439]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
GCTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504