Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG812_RS00130 Genome accession   NZ_CP107784
Coordinates   24857..25492 (+) Length   211 a.a.
NCBI ID   WP_329019348.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00566     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 19857..30492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG812_RS00105 - 19937..20305 (-) 369 WP_330234523.1 DUF6420 family protein -
  OG812_RS00110 (OG812_00110) - 20337..21155 (+) 819 WP_330234524.1 hypothetical protein -
  OG812_RS00115 (OG812_00115) - 21191..22432 (-) 1242 WP_330234525.1 cytochrome P450 -
  OG812_RS00120 (OG812_00125) - 22984..23535 (-) 552 WP_329019354.1 hypothetical protein -
  OG812_RS00125 (OG812_00130) - 23688..24860 (+) 1173 WP_329019351.1 histidine kinase -
  OG812_RS00130 (OG812_00135) vraR 24857..25492 (+) 636 WP_329019348.1 response regulator transcription factor Regulator
  OG812_RS00135 - 25568..25888 (+) 321 WP_330237306.1 transposase -
  OG812_RS00140 (OG812_00145) - 25915..26501 (-) 587 Protein_27 Imm21 family immunity protein -
  OG812_RS00145 (OG812_00150) - 26609..26701 (-) 93 Protein_28 NIPSNAP family protein -
  OG812_RS00150 (OG812_00155) - 26821..27207 (-) 387 WP_329019339.1 VOC family protein -
  OG812_RS00155 (OG812_00160) - 27353..27643 (+) 291 WP_330234526.1 hypothetical protein -
  OG812_RS00165 (OG812_00170) - 28342..28761 (-) 420 WP_329019333.1 hypothetical protein -
  OG812_RS00170 (OG812_00175) - 28999..30174 (-) 1176 WP_329019330.1 glutathione-independent formaldehyde dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22311.85 Da        Isoelectric Point: 4.7440

>NTDB_id=646171 OG812_RS00130 WP_329019348.1 24857..25492(+) (vraR) [Streptomyces sp. NBC_00566]
MIRVLVAEDQSAVRAGLVLILGSAPDVEVAGEAADGERAVELARELRPDVVLMDVQMPLLDGVSATRLIMAEGLADVLVL
TTFDLDEYVFGALRAGAAGFLLKNAEARELLEAVRTVARGEGVVAPAVTRRLIAEFAAQPARTADRTVLEGLTPREREVL
SRVGEGLSNAEIGARLAMAEGTVKTHVSRLLAKLGLRSRVQAAVLAQELGL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=646171 OG812_RS00130 WP_329019348.1 24857..25492(+) (vraR) [Streptomyces sp. NBC_00566]
GTGATCCGAGTCCTGGTCGCCGAGGACCAGTCGGCCGTACGAGCCGGTCTCGTGCTCATCCTGGGCAGCGCGCCCGACGT
GGAGGTCGCCGGGGAGGCGGCGGACGGCGAGCGAGCGGTGGAGCTGGCACGGGAGCTGCGGCCGGACGTGGTGCTGATGG
ACGTACAGATGCCGCTGCTGGACGGGGTGTCCGCGACCCGGCTGATCATGGCCGAGGGTCTGGCGGACGTGCTGGTGCTG
ACCACCTTCGACCTCGACGAGTACGTCTTCGGGGCGCTGCGGGCCGGGGCGGCCGGGTTCTTGCTGAAGAACGCCGAGGC
GCGCGAGCTGCTGGAAGCGGTGCGGACGGTGGCGCGCGGGGAGGGTGTGGTCGCCCCGGCGGTGACCCGGCGCCTGATCG
CCGAGTTCGCCGCCCAGCCGGCCCGGACGGCCGACCGGACCGTGCTGGAGGGGCTGACCCCGCGCGAGCGCGAGGTGCTG
TCCCGCGTCGGCGAGGGGCTGTCCAACGCCGAGATCGGGGCCCGGCTGGCAATGGCGGAGGGCACGGTGAAGACCCACGT
CAGCCGGCTGCTCGCGAAGCTGGGACTACGCAGCCGGGTCCAAGCAGCGGTGCTGGCACAGGAGTTGGGTTTGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-206)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.623

100

0.398
  degU Bacillus subtilis subsp. subtilis str. 168

37.838

100

0.398