Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHO83_RS36710 Genome accession   NZ_CP107783
Coordinates   8149653..8150303 (-) Length   216 a.a.
NCBI ID   WP_330280346.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00569     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8144653..8155303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHO83_RS36690 (OHO83_36725) - 8145365..8146195 (-) 831 WP_266668061.1 alpha/beta fold hydrolase -
  OHO83_RS36695 (OHO83_36730) - 8146380..8147258 (+) 879 WP_330280345.1 RNA polymerase sigma-70 factor -
  OHO83_RS36700 (OHO83_36735) - 8147519..8148286 (+) 768 WP_266668057.1 GntR family transcriptional regulator -
  OHO83_RS36705 (OHO83_36740) - 8148378..8149535 (-) 1158 WP_266676180.1 ROK family transcriptional regulator -
  OHO83_RS36710 (OHO83_36745) vraR 8149653..8150303 (-) 651 WP_330280346.1 response regulator transcription factor Regulator
  OHO83_RS36715 (OHO83_36750) - 8150349..8151581 (-) 1233 WP_330280347.1 histidine kinase -
  OHO83_RS36720 (OHO83_36755) - 8151690..8152619 (+) 930 WP_266668051.1 ATP-binding cassette domain-containing protein -
  OHO83_RS36725 (OHO83_36760) - 8152622..8153359 (+) 738 WP_266668049.1 ABC transporter permease -
  OHO83_RS36730 (OHO83_36765) - 8153425..8153859 (+) 435 WP_266668047.1 hypothetical protein -
  OHO83_RS36735 (OHO83_36770) - 8153950..8154756 (+) 807 WP_329436210.1 SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23119.66 Da        Isoelectric Point: 4.9777

>NTDB_id=646161 OHO83_RS36710 WP_330280346.1 8149653..8150303(-) (vraR) [Streptomyces sp. NBC_00569]
MPLTVLLVDDEPLVRAGLRAVLSAQPDIEVVGEAADGAAVIPLVRQLRPDVVAMDVRMPLLDGIEATRAVLRSVSEPPKI
LVITTFENDEYVYGALRAGADGFLLKRSRPAEIVNAVRLVAEGDSLLFPAAVRRLAAEYGNRSAREALDRAALTEREADV
LRLMTRGLSNAEIAERLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFVSPG

Nucleotide


Download         Length: 651 bp        

>NTDB_id=646161 OHO83_RS36710 WP_330280346.1 8149653..8150303(-) (vraR) [Streptomyces sp. NBC_00569]
ATGCCGCTCACCGTGCTCCTCGTCGACGACGAACCGCTGGTCCGCGCGGGGTTGCGCGCCGTGCTTTCGGCGCAGCCGGA
CATCGAGGTCGTGGGCGAGGCGGCCGACGGCGCCGCGGTGATCCCGCTCGTCCGGCAGCTGCGTCCCGACGTCGTCGCCA
TGGATGTGCGCATGCCTCTCCTGGACGGGATCGAGGCCACGCGCGCGGTGCTGCGCAGTGTGTCCGAGCCGCCCAAGATC
CTGGTCATCACGACGTTCGAGAACGACGAGTACGTCTACGGGGCGCTGCGGGCGGGTGCCGACGGGTTCCTGCTGAAGCG
GTCGCGGCCCGCCGAGATCGTGAACGCGGTCCGGCTCGTGGCCGAGGGCGATTCCCTGCTGTTCCCGGCGGCCGTGCGGC
GGCTCGCGGCCGAGTACGGCAACAGGTCGGCACGCGAGGCGCTGGACCGCGCCGCGCTCACGGAGCGGGAGGCGGACGTG
CTGCGCCTGATGACGCGGGGCCTGTCCAACGCGGAGATCGCCGAGCGGCTCGTCGTCGGCACGGAGACGGTCAAGTCGCA
TGTGAGCGCCGTCCTCGCCAAGCTCGGCGCGCGGGACCGGACGCAGGCCGTCATCGCCGCGTACGAATCCGGTTTCGTGT
CGCCCGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-206)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.654

99.074

0.403
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.37