Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHO83_RS33695 Genome accession   NZ_CP107783
Coordinates   7484710..7485354 (+) Length   214 a.a.
NCBI ID   WP_266668997.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00569     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7479710..7490354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHO83_RS33675 (OHO83_33700) - 7480566..7481294 (-) 729 WP_266669005.1 transglycosylase SLT domain-containing protein -
  OHO83_RS33680 (OHO83_33705) - 7481589..7482671 (-) 1083 WP_330280183.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OHO83_RS33685 (OHO83_33710) - 7482668..7483369 (-) 702 WP_330280184.1 SDR family oxidoreductase -
  OHO83_RS33690 (OHO83_33715) - 7483572..7484717 (+) 1146 WP_330280185.1 GAF domain-containing sensor histidine kinase -
  OHO83_RS33695 (OHO83_33720) vraR 7484710..7485354 (+) 645 WP_266668997.1 response regulator transcription factor Regulator
  OHO83_RS33700 (OHO83_33725) - 7485551..7485793 (+) 243 WP_266668995.1 chaplin -
  OHO83_RS33705 (OHO83_33730) - 7485992..7486231 (+) 240 WP_266668993.1 chaplin -
  OHO83_RS33710 (OHO83_33735) - 7486350..7487138 (-) 789 WP_266668991.1 hypothetical protein -
  OHO83_RS33715 (OHO83_33740) - 7487263..7488060 (+) 798 WP_266668989.1 ABC transporter ATP-binding protein -
  OHO83_RS33720 (OHO83_33745) - 7488125..7488556 (+) 432 WP_266668987.1 NfeD family protein -
  OHO83_RS33725 (OHO83_33750) - 7488697..7489629 (+) 933 WP_100592537.1 SPFH domain-containing protein -
  OHO83_RS33730 (OHO83_33755) - 7489702..7490208 (-) 507 WP_266668985.1 HNH endonuclease -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23112.39 Da        Isoelectric Point: 5.6857

>NTDB_id=646153 OHO83_RS33695 WP_266668997.1 7484710..7485354(+) (vraR) [Streptomyces sp. NBC_00569]
MADNRIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEASDGAEGVARTEELKPDVVLMDVKMPVMDGVEALRKLRELSNPA
RVLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLSQEETGGGQGRGNSLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGAAG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=646153 OHO83_RS33695 WP_266668997.1 7484710..7485354(+) (vraR) [Streptomyces sp. NBC_00569]
GTGGCTGACAACAGGATCCGGGTGCTGCTGGTCGACGACCACCAGGTCGTCCGCCGAGGGCTGCGCACGTTCCTCGAGGT
CCAGGACGACATCGAGGTCGTGGGGGAGGCGTCGGACGGCGCCGAGGGTGTCGCCCGTACCGAGGAGCTGAAGCCGGACG
TCGTCCTGATGGACGTCAAGATGCCCGTCATGGACGGCGTCGAGGCCCTGCGCAAGCTGCGCGAGCTGTCCAACCCCGCG
CGCGTGCTCATCGTCACGAGCTTCACCGAACAGCGCACCGTGGTCCCCGCCCTGCGCGCGGGCGCCGCCGGATACGTCTA
CAAGGACGTCGACCCGGACGCCCTGGCCGGCGCCATCCGCTCGGTGCACGCGGGCCATGTCCTGCTCCAGCCGGAGGTGG
CGGGCGCCCTGCTCTCGCAGGAGGAGACCGGCGGAGGACAGGGGAGAGGCAATTCTCTGACCGAGCGGGAGCGAGAGGTG
CTCGGCCTGATCGCGGACGGCCGGTCGAACCGGGAGATCGCCCGCGCCCTCGTCCTCTCCGAGAAGACGGTCAAGACTCA
TGTGTCCAACATCCTCATGAAGCTCGATCTGGCGGACCGTACCCAGGCCGCTCTGTGGGCCGTACGCCATGGGGCGGCCG
GCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.631

96.262

0.439
  degU Bacillus subtilis subsp. subtilis str. 168

38.739

100

0.402