Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHO83_RS30380 Genome accession   NZ_CP107783
Coordinates   6765059..6765736 (-) Length   225 a.a.
NCBI ID   WP_266670190.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00569     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6760059..6770736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHO83_RS30360 (OHO83_30375) - 6760945..6761406 (+) 462 WP_266670198.1 MerR family transcriptional regulator -
  OHO83_RS30365 (OHO83_30380) - 6761412..6762458 (+) 1047 WP_330280019.1 aldo/keto reductase -
  OHO83_RS30370 (OHO83_30385) - 6762528..6763745 (-) 1218 WP_266670194.1 acyltransferase -
  OHO83_RS30375 (OHO83_30390) - 6763742..6764872 (-) 1131 WP_266670192.1 alpha/beta hydrolase -
  OHO83_RS30380 (OHO83_30395) vraR 6765059..6765736 (-) 678 WP_266670190.1 response regulator transcription factor Regulator
  OHO83_RS30385 (OHO83_30400) - 6765753..6767117 (-) 1365 WP_329435395.1 sensor histidine kinase -
  OHO83_RS30390 (OHO83_30405) - 6767295..6768152 (-) 858 WP_330280020.1 DUF4429 domain-containing protein -
  OHO83_RS30395 (OHO83_30410) - 6768229..6769437 (-) 1209 WP_329435399.1 alpha/beta hydrolase -
  OHO83_RS30400 (OHO83_30415) - 6769598..6770242 (-) 645 WP_266670182.1 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24331.13 Da        Isoelectric Point: 4.9741

>NTDB_id=646147 OHO83_RS30380 WP_266670190.1 6765059..6765736(-) (vraR) [Streptomyces sp. NBC_00569]
MTIRVIIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGKQGVEISRTTHPDVVLMDVRMPEMDGIAATRALLDPPPGVIHR
PKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVAAGEALLAPTVTRRLIEDIARQRPSGRRDRSPELNCL
TPRETEVLELIARGLSNQEIAEKLVLAEQTVKTHIGRVLAKLGLRDRAQAVIFAYETGLVTPGDQ

Nucleotide


Download         Length: 678 bp        

>NTDB_id=646147 OHO83_RS30380 WP_266670190.1 6765059..6765736(-) (vraR) [Streptomyces sp. NBC_00569]
ATGACCATCCGCGTGATCATCGTCGACGACCAGGCCATGGTGCGAGCGGGGTTCGCCGCGCTGCTGGCCGCGCAGAGCGA
CATCGACGTCGTGGGCGAGGCTCCGGACGGCAAGCAGGGTGTCGAGATCAGCCGGACCACACATCCCGATGTCGTCCTCA
TGGACGTGCGGATGCCCGAGATGGACGGGATCGCCGCGACCCGCGCGCTCCTCGACCCTCCACCGGGCGTGATCCACCGC
CCCAAGGTCCTGATGCTCACCACGTTCGACGTGGACGACTATGTGTACGAGGCACTGCGCGCGGGCGCTTCGGGATTCCT
CCTCAAGGACGCCCCACCGGCCGATCTCATCGCGGCGGTGCGTGTGGTGGCCGCCGGGGAGGCGCTGCTCGCCCCGACGG
TCACGCGTCGGCTCATCGAGGACATCGCGAGGCAGCGCCCCTCCGGCCGCAGGGACCGCTCGCCGGAGCTGAACTGTCTG
ACGCCACGCGAGACCGAGGTCCTCGAACTCATCGCCCGGGGCCTGTCCAATCAGGAGATCGCGGAGAAGCTGGTGCTCGC
GGAGCAGACCGTGAAGACCCATATCGGCCGCGTGCTGGCGAAGTTGGGGCTGCGAGACCGGGCGCAAGCCGTGATTTTCG
CCTACGAGACCGGCCTCGTCACGCCCGGCGACCAATAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(159-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.273

97.778

0.413
  degU Bacillus subtilis subsp. subtilis str. 168

38.767

100

0.391