Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHO83_RS25180 Genome accession   NZ_CP107783
Coordinates   5574282..5574923 (-) Length   213 a.a.
NCBI ID   WP_266671807.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00569     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5569282..5579923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHO83_RS25155 (OHO83_25170) - 5569997..5570470 (+) 474 WP_266671817.1 GNAT family N-acetyltransferase -
  OHO83_RS25160 (OHO83_25175) - 5570495..5571499 (-) 1005 WP_266671815.1 zinc-binding dehydrogenase -
  OHO83_RS25165 (OHO83_25180) - 5571590..5572765 (-) 1176 WP_266671812.1 FAD-dependent oxidoreductase -
  OHO83_RS25170 (OHO83_25185) - 5572923..5573624 (+) 702 WP_266671810.1 pentapeptide repeat-containing protein -
  OHO83_RS25175 (OHO83_25190) - 5573649..5574158 (-) 510 WP_227295543.1 hypothetical protein -
  OHO83_RS25180 (OHO83_25195) vraR 5574282..5574923 (-) 642 WP_266671807.1 response regulator transcription factor Regulator
  OHO83_RS25185 (OHO83_25200) - 5574920..5576053 (-) 1134 WP_266676452.1 sensor histidine kinase -
  OHO83_RS25190 (OHO83_25205) - 5576339..5576893 (+) 555 WP_266671805.1 heme-binding protein -
  OHO83_RS25195 (OHO83_25210) - 5577108..5578490 (+) 1383 WP_266671803.1 M1 family metallopeptidase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22427.71 Da        Isoelectric Point: 5.1135

>NTDB_id=646136 OHO83_RS25180 WP_266671807.1 5574282..5574923(-) (vraR) [Streptomyces sp. NBC_00569]
MSEPVRLLVCDDHVVVRAGLLALLGSAPGIEVVGEAGTGDEAVALAAKLTPDVVLMDLQLGEGIDGVEATRRITTAPPEA
GPHPHVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIQAAAEGRTTLSPPVASRVMARMRSPRPSLTDRERDIL
GQLAQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLLG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=646136 OHO83_RS25180 WP_266671807.1 5574282..5574923(-) (vraR) [Streptomyces sp. NBC_00569]
ATGAGTGAGCCCGTACGACTGCTGGTGTGCGACGACCACGTGGTGGTGCGCGCGGGACTGCTCGCCCTGCTCGGCAGCGC
ACCCGGCATCGAGGTCGTGGGCGAGGCCGGCACGGGCGACGAGGCGGTGGCGCTCGCCGCGAAACTGACGCCGGACGTCG
TCCTCATGGACCTCCAGCTGGGCGAGGGCATCGACGGCGTGGAAGCGACGCGCCGCATCACGACCGCGCCGCCCGAGGCG
GGCCCGCACCCGCATGTCCTGGTCCTGACCACGTACGACACGGACGCCGACATCACCCGGGCCATCGAGGCGGGCGCCAC
GGGGTACCTCCTCAAGGCGGAGCGTCCCGAGGAGCTGTTCGCCGCGATCCAGGCCGCCGCCGAGGGCCGTACGACGCTGT
CCCCGCCGGTCGCGAGCCGCGTCATGGCCCGTATGCGCAGCCCGCGCCCGTCCCTCACGGATCGCGAGCGCGACATCCTC
GGCCAGCTCGCCCAGGGCCTGGGCAACCGGGACATCGCCCGCGCCCTGTTCATCAGCGAGGCCACGGTGAAGACCCACCT
GGGCCGGATCTACGACAAGCTCGGCGTGGACACCCGGGCGGGCGCGGTGGCGGTGGCGAAGGAACAGCGGCTGTTGGGCT
GA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(8-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.389

99.061

0.38
  degU Bacillus subtilis subsp. subtilis str. 168

36.036

100

0.376