Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHO83_RS22430 Genome accession   NZ_CP107783
Coordinates   4982257..4982925 (-) Length   222 a.a.
NCBI ID   WP_266672677.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00569     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4977257..4987925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHO83_RS22410 (OHO83_22425) - 4978249..4979070 (+) 822 WP_266672683.1 diacylglycerol kinase -
  OHO83_RS22415 (OHO83_22430) - 4979079..4980695 (-) 1617 WP_266672681.1 ABC transporter permease -
  OHO83_RS22420 (OHO83_22435) - 4980692..4981630 (-) 939 WP_266672679.1 ABC transporter ATP-binding protein -
  OHO83_RS22425 (OHO83_22440) - 4981819..4982250 (+) 432 WP_266676504.1 MarR family transcriptional regulator -
  OHO83_RS22430 (OHO83_22445) vraR 4982257..4982925 (-) 669 WP_266672677.1 response regulator transcription factor Regulator
  OHO83_RS22435 (OHO83_22450) - 4983027..4984373 (-) 1347 WP_266676502.1 histidine kinase -
  OHO83_RS22440 (OHO83_22455) - 4984507..4985379 (-) 873 WP_266672675.1 alpha/beta hydrolase -
  OHO83_RS22445 (OHO83_22460) - 4985501..4986151 (+) 651 WP_266672673.1 TetR/AcrR family transcriptional regulator -
  OHO83_RS22450 (OHO83_22465) kynU 4986165..4987385 (-) 1221 WP_266672671.1 kynureninase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24154.00 Da        Isoelectric Point: 4.6799

>NTDB_id=646129 OHO83_RS22430 WP_266672677.1 4982257..4982925(-) (vraR) [Streptomyces sp. NBC_00569]
MTIRVLIADDQMMVREGFSVLLNAMPDIEVVGEAVNGREAIARVRELSPDVVLMDIRMPELNGIEATREIAAMDGSAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAQGEALLAPSVTRRLITEFSKLSEIPKLPAVANPEAFGELT
ERETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLVRPA

Nucleotide


Download         Length: 669 bp        

>NTDB_id=646129 OHO83_RS22430 WP_266672677.1 4982257..4982925(-) (vraR) [Streptomyces sp. NBC_00569]
ATGACCATCCGCGTACTGATCGCCGACGACCAGATGATGGTCCGTGAGGGCTTCTCGGTGCTGCTCAACGCGATGCCCGA
CATCGAGGTCGTCGGCGAGGCGGTCAACGGCCGGGAGGCGATCGCCCGGGTCCGTGAACTCTCCCCGGACGTCGTCCTCA
TGGACATCCGCATGCCGGAGCTGAACGGCATCGAGGCCACCCGCGAGATCGCCGCGATGGACGGCAGCGCGAAGGTGCTC
GTCCTGACCACCTTCGACCTCGACGAGTACGTCTACCAGGCCCTGCGCGCCGGTGCCTCCGGCTTCCTCCTCAAGGACGC
CTCGGCCCGCCAACTGGCCGACGGTGTAAGGGTGGTGGCCCAAGGCGAGGCGCTCCTCGCCCCCTCGGTCACCCGCCGCC
TGATCACGGAGTTCTCCAAGTTGTCCGAGATCCCGAAGCTGCCGGCGGTGGCGAACCCGGAGGCGTTCGGTGAGCTGACG
GAGCGCGAGACGGAGGTGCTGGTCCTGATCGCCCAGGGCCTGTCGAACGCGGAGATCGCCGAACGGCTGGTCGTCGCCGA
GTCGACCATCAAGACCCACGTCAGCCGGGTCCTGGTGAAGCTGGGCCTGCGCGACCGCACCCAGGCGGCGGTGTTCGCGT
ACGAGGCCCGGCTGGTCAGGCCCGCGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(159-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.091

99.099

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

41.743

98.198

0.41