Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHO83_RS02195 Genome accession   NZ_CP107783
Coordinates   476503..477171 (-) Length   222 a.a.
NCBI ID   WP_266679481.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00569     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 471503..482171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHO83_RS02175 (OHO83_02175) - 472262..473224 (+) 963 WP_266679487.1 zinc-binding dehydrogenase -
  OHO83_RS02180 (OHO83_02180) - 473261..473446 (+) 186 WP_330280839.1 hypothetical protein -
  OHO83_RS02185 (OHO83_02185) - 474085..475056 (-) 972 WP_266679485.1 SDR family NAD(P)-dependent oxidoreductase -
  OHO83_RS02190 (OHO83_02190) - 475643..476221 (+) 579 WP_266679483.1 dihydrofolate reductase family protein -
  OHO83_RS02195 (OHO83_02195) vraR 476503..477171 (-) 669 WP_266679481.1 response regulator transcription factor Regulator
  OHO83_RS02200 (OHO83_02200) - 477168..478451 (-) 1284 WP_266679479.1 histidine kinase -
  OHO83_RS02205 (OHO83_02205) - 478522..479382 (-) 861 WP_266679477.1 ABC transporter permease -
  OHO83_RS02210 (OHO83_02210) - 479379..480317 (-) 939 WP_330278516.1 ATP-binding cassette domain-containing protein -
  OHO83_RS02215 (OHO83_02215) - 480509..481588 (-) 1080 WP_330280702.1 sodium-dependent transporter -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24204.86 Da        Isoelectric Point: 6.4994

>NTDB_id=646086 OHO83_RS02195 WP_266679481.1 476503..477171(-) (vraR) [Streptomyces sp. NBC_00569]
MTTVLVVDDQPLQRYGLRMLLDSVPETEVVGEATHGADAVRKAAELRPDVVLMDVRMPGMDGIEATRRIVATGDRSRVLV
MTTFDLDEYVYAALRAGASGFLLKDARPEELLAGIRAVAVGDAVIAPALTRRLLYEFARLVPPRANGSDEEPKLSSLTDR
EREILVAVGKGWTNGEIATRFVLSESTVKTHVGRVLSKIGARDRIQAVIFAYDHGLARPHGC

Nucleotide


Download         Length: 669 bp        

>NTDB_id=646086 OHO83_RS02195 WP_266679481.1 476503..477171(-) (vraR) [Streptomyces sp. NBC_00569]
ATGACCACCGTGCTCGTCGTCGACGACCAGCCTCTCCAGCGGTACGGGCTCCGCATGCTCCTCGACTCAGTGCCCGAGAC
AGAGGTGGTCGGCGAGGCCACGCACGGAGCCGACGCCGTGCGCAAGGCCGCCGAACTCCGACCCGACGTCGTCCTCATGG
ACGTACGCATGCCGGGCATGGACGGCATCGAGGCCACGCGCCGCATCGTCGCCACGGGCGACCGCTCCCGCGTCCTCGTC
ATGACCACCTTCGACCTCGACGAGTACGTCTACGCGGCTCTGCGCGCCGGAGCCAGCGGCTTCCTCCTCAAGGACGCCCG
CCCCGAGGAACTCCTGGCCGGCATCCGTGCCGTCGCCGTCGGGGACGCGGTGATCGCTCCGGCACTCACCCGCCGCCTGC
TGTACGAGTTCGCCCGACTCGTGCCACCCCGCGCGAACGGGTCGGACGAGGAGCCGAAGCTGAGCTCCCTCACCGACCGC
GAACGCGAGATCCTCGTCGCCGTCGGCAAAGGCTGGACCAACGGAGAGATCGCCACCCGCTTCGTCCTGTCGGAGTCCAC
CGTCAAGACGCACGTCGGCCGCGTCCTGTCCAAGATCGGCGCCCGCGACCGCATCCAGGCGGTGATCTTCGCCTACGACC
ACGGCCTGGCCCGGCCTCATGGGTGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(155-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.605

96.847

0.374
  degU Bacillus subtilis subsp. subtilis str. 168

35.874

100

0.36