Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG734_RS40260 Genome accession   NZ_CP107780
Coordinates   9220962..9221585 (-) Length   207 a.a.
NCBI ID   WP_330292339.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00576     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 9215962..9226585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG734_RS40240 (OG734_40290) - 9216453..9217682 (-) 1230 WP_330292335.1 DUF349 domain-containing protein -
  OG734_RS40245 (OG734_40295) - 9217817..9218638 (-) 822 WP_330292336.1 peptidylprolyl isomerase -
  OG734_RS40250 (OG734_40300) - 9218817..9219539 (+) 723 WP_330292337.1 MBL fold metallo-hydrolase -
  OG734_RS40255 (OG734_40305) hisS 9219553..9220815 (+) 1263 WP_330292338.1 histidine--tRNA ligase -
  OG734_RS40260 (OG734_40310) vraR 9220962..9221585 (-) 624 WP_330292339.1 response regulator transcription factor Regulator
  OG734_RS40265 (OG734_40315) - 9221582..9222784 (-) 1203 WP_330292340.1 sensor histidine kinase -
  OG734_RS40270 (OG734_40320) - 9222781..9223626 (-) 846 WP_330292341.1 ABC transporter permease -
  OG734_RS40275 (OG734_40325) - 9223623..9224489 (-) 867 WP_330292342.1 ABC transporter ATP-binding protein -
  OG734_RS40280 (OG734_40330) - 9224630..9225289 (+) 660 WP_330292343.1 vitamin K epoxide reductase family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22206.60 Da        Isoelectric Point: 5.1472

>NTDB_id=646071 OG734_RS40260 WP_330292339.1 9220962..9221585(-) (vraR) [Streptomyces sp. NBC_00576]
MIRIILADDHPVVREGLRAMLSAEPDLDVVADASSGPQAEALAAELRPDIVLMDLRMPGGGGVDSIVRMSEAGLPCRVVV
LTTYETDRDILRAVEAGAAGYLLKDLPRGELADAVRAAARGETVLAPSVAARLVDQLRTRPDRPRLSERETAVLRLVAEG
CTNAEIGRRLFIGESTVKTHLLRVFGKLGVDDRTAAVTSAMRYGLLD

Nucleotide


Download         Length: 624 bp        

>NTDB_id=646071 OG734_RS40260 WP_330292339.1 9220962..9221585(-) (vraR) [Streptomyces sp. NBC_00576]
GTGATCCGCATCATCCTGGCCGACGACCATCCCGTCGTACGGGAAGGGCTGCGCGCGATGCTCAGCGCCGAACCGGACCT
CGATGTGGTCGCCGACGCGTCGAGCGGACCGCAGGCGGAGGCGCTGGCGGCGGAGCTGCGGCCGGACATCGTGCTGATGG
ATCTGCGGATGCCGGGCGGTGGAGGCGTGGACTCGATCGTGCGGATGAGCGAGGCCGGGCTGCCGTGCCGCGTGGTCGTC
CTCACGACGTACGAGACGGACCGTGACATCCTGCGGGCCGTGGAGGCGGGAGCGGCGGGCTACCTGCTGAAGGACCTGCC
GCGTGGCGAACTGGCGGACGCGGTACGGGCGGCGGCGCGCGGCGAGACGGTACTGGCGCCGTCGGTGGCGGCCCGGCTGG
TGGACCAGCTCCGGACGCGACCGGATCGGCCTCGACTGTCGGAACGGGAGACGGCGGTACTGCGGCTGGTGGCGGAGGGG
TGCACGAACGCCGAGATCGGACGGCGGTTGTTCATCGGCGAGTCGACGGTGAAGACGCATCTGCTGCGGGTGTTCGGCAA
GCTGGGCGTGGACGACCGCACGGCAGCGGTGACGAGCGCGATGCGATACGGCTTGCTGGACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(146-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.864

99.517

0.377
  degU Bacillus subtilis subsp. subtilis str. 168

33.929

100

0.367