Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG734_RS38225 Genome accession   NZ_CP107780
Coordinates   8770714..8771355 (+) Length   213 a.a.
NCBI ID   WP_330291997.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00576     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8765714..8776355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG734_RS38210 (OG734_38250) - 8767459..8768217 (-) 759 WP_330291995.1 transglycosylase SLT domain-containing protein -
  OG734_RS38215 (OG734_38255) - 8768557..8769377 (-) 821 Protein_7568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OG734_RS38220 (OG734_38260) - 8769576..8770721 (+) 1146 WP_330291996.1 GAF domain-containing sensor histidine kinase -
  OG734_RS38225 (OG734_38265) vraR 8770714..8771355 (+) 642 WP_330291997.1 response regulator transcription factor Regulator
  OG734_RS38230 (OG734_38270) chpE 8771503..8771748 (+) 246 WP_330291998.1 chaplin ChpE -
  OG734_RS38235 (OG734_38275) - 8771978..8772760 (-) 783 WP_330291999.1 hypothetical protein -
  OG734_RS38240 (OG734_38280) - 8772890..8773681 (+) 792 WP_318320274.1 ABC transporter ATP-binding protein -
  OG734_RS38245 (OG734_38285) - 8773786..8774217 (+) 432 WP_330292000.1 NfeD family protein -
  OG734_RS38250 (OG734_38290) - 8774365..8775315 (+) 951 WP_330292001.1 SPFH domain-containing protein -
  OG734_RS38255 (OG734_38295) - 8775430..8775936 (-) 507 WP_330292002.1 HNH endonuclease -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23149.45 Da        Isoelectric Point: 5.3618

>NTDB_id=646068 OG734_RS38225 WP_330291997.1 8770714..8771355(+) (vraR) [Streptomyces sp. NBC_00576]
MADAIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEASDGAEGVDRAQELKPDIVLMDVKMPGMDGVEALRRLRELDNPAR
VLIVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGAIRSVHAGHILLQPEVAGALLTQEETHSGQGRGGSLTEREREVL
TLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGVVG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=646068 OG734_RS38225 WP_330291997.1 8770714..8771355(+) (vraR) [Streptomyces sp. NBC_00576]
GTGGCTGACGCAATCAGGGTGCTGCTCGTCGACGACCACCAAGTGGTCCGCCGGGGCCTGCGCACGTTCCTCGAAGTGCA
GGACGACATCGAGGTCGTGGGCGAGGCGTCGGACGGTGCCGAAGGAGTCGACCGCGCGCAGGAACTCAAACCCGACATCG
TCCTCATGGACGTCAAGATGCCAGGCATGGACGGCGTCGAAGCGCTGCGCAGACTCCGCGAACTCGACAACCCCGCGCGC
GTGCTGATCGTCACGAGCTTCACCGAGCAGCGCACGGTGGTCCCGGCCCTGCGCGCCGGCGCCGCCGGGTACGTCTACAA
GGACATCGACCCGGACGCCCTCGCCGGCGCCATCCGCTCCGTGCACGCCGGACACATCCTGCTCCAGCCCGAGGTCGCCG
GCGCGCTGCTGACCCAGGAGGAGACACACTCGGGCCAGGGCAGGGGCGGCTCGCTCACCGAGCGGGAGCGGGAGGTGCTG
ACCCTGATCGCGGACGGCCGCTCGAACCGGGAGATAGCCCGTGCCCTGGTGCTGTCCGAGAAGACGGTCAAGACGCATGT
CTCGAACATCCTGATGAAACTCGACCTGGCGGACCGTACGCAGGCAGCGTTGTGGGCGGTACGTCACGGTGTGGTCGGAT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.714

98.592

0.451
  degU Bacillus subtilis subsp. subtilis str. 168

38.117

100

0.399