Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG734_RS33110 Genome accession   NZ_CP107780
Coordinates   7599985..7600659 (+) Length   224 a.a.
NCBI ID   WP_330291097.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00576     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7594985..7605659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG734_RS33090 (OG734_33130) - 7595499..7596620 (+) 1122 WP_330291093.1 abortive phage infection protein -
  OG734_RS33095 (OG734_33135) - 7596810..7597637 (-) 828 WP_330291094.1 ABC transporter permease -
  OG734_RS33100 (OG734_33140) - 7597688..7598638 (-) 951 WP_330291095.1 ATP-binding cassette domain-containing protein -
  OG734_RS33105 (OG734_33145) - 7598771..7599988 (+) 1218 WP_330291096.1 sensor histidine kinase -
  OG734_RS33110 (OG734_33150) vraR 7599985..7600659 (+) 675 WP_330291097.1 response regulator transcription factor Regulator
  OG734_RS33115 (OG734_33155) - 7600620..7601636 (-) 1017 WP_330291098.1 ABC transporter substrate-binding protein -
  OG734_RS33120 (OG734_33160) - 7601649..7602419 (-) 771 WP_330291099.1 ABC transporter ATP-binding protein -
  OG734_RS33125 (OG734_33165) - 7602425..7603465 (-) 1041 WP_330291100.1 iron ABC transporter permease -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24284.01 Da        Isoelectric Point: 4.5688

>NTDB_id=646058 OG734_RS33110 WP_330291097.1 7599985..7600659(+) (vraR) [Streptomyces sp. NBC_00576]
MTTTIRVLLVDDQQLIRTALSMVIADLPDIEVVGEAADGEEAVALVDQLAPDVVMMDLRMPGMDGIEATRRITRGAGTEG
TRIIVLTTFDDDDHVYGALRAGASGFLVKDMALDDILAAIRIVAAGDALIAPSVTRRLIRDFAAGPQQHVQQRELKAITD
REREVLTLVGRGLSNTEIAAELCISMATAKTYITRLLAKLDARDRVQLVITAYEVGLVSTTDRR

Nucleotide


Download         Length: 675 bp        

>NTDB_id=646058 OG734_RS33110 WP_330291097.1 7599985..7600659(+) (vraR) [Streptomyces sp. NBC_00576]
ATGACGACGACGATCCGGGTTCTCCTCGTCGACGACCAGCAGCTGATCCGTACGGCCCTGAGCATGGTCATCGCCGACCT
GCCGGACATCGAGGTGGTGGGCGAGGCCGCCGACGGCGAGGAGGCGGTCGCCCTTGTGGACCAACTGGCCCCGGATGTCG
TGATGATGGACCTGCGCATGCCGGGTATGGACGGCATCGAGGCGACCCGTCGCATCACCCGGGGGGCAGGGACGGAAGGC
ACCCGGATCATCGTCCTCACCACCTTCGACGACGACGATCACGTGTACGGGGCGCTGCGCGCGGGCGCGTCCGGGTTCCT
GGTCAAGGACATGGCCCTGGACGACATCCTCGCGGCGATCCGGATCGTGGCCGCCGGGGACGCCCTGATCGCGCCCAGCG
TGACCCGCCGGCTCATCCGGGACTTCGCCGCCGGTCCACAACAACACGTCCAACAGCGGGAGTTGAAGGCCATCACCGAC
CGCGAACGCGAGGTGCTCACGCTCGTCGGCCGGGGCCTGTCGAACACGGAGATCGCCGCCGAACTGTGCATCAGCATGGC
GACGGCGAAGACGTACATCACCCGCCTCCTCGCCAAGCTGGACGCTCGCGACCGCGTCCAGCTGGTGATCACCGCCTACG
AGGTGGGGCTGGTCTCCACCACCGACCGCAGATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-212)

Response regulator receiver domain (Response_reg)

(7-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.788

96.875

0.366
  degU Bacillus subtilis subsp. subtilis str. 168

35.526

100

0.362