Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG734_RS26015 Genome accession   NZ_CP107780
Coordinates   6015070..6015669 (+) Length   199 a.a.
NCBI ID   WP_330289901.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00576     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6010070..6020669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG734_RS26000 (OG734_26050) - 6013048..6013395 (+) 348 WP_330289899.1 hypothetical protein -
  OG734_RS26005 (OG734_26055) - 6013457..6014227 (-) 771 WP_330289900.1 SLATT domain-containing protein -
  OG734_RS26010 (OG734_26060) - 6014594..6014941 (+) 348 WP_006373444.1 YbaB/EbfC family nucleoid-associated protein -
  OG734_RS26015 (OG734_26065) recR 6015070..6015669 (+) 600 WP_330289901.1 recombination mediator RecR Machinery gene
  OG734_RS26020 (OG734_26070) - 6015662..6016321 (+) 660 WP_330289902.1 DUF5063 domain-containing protein -
  OG734_RS26025 (OG734_26075) - 6016405..6016857 (-) 453 WP_330289903.1 hypothetical protein -
  OG734_RS26030 (OG734_26080) - 6016942..6017763 (+) 822 WP_330293788.1 helix-turn-helix transcriptional regulator -
  OG734_RS26035 (OG734_26085) - 6017760..6018011 (+) 252 WP_330289904.1 DUF397 domain-containing protein -
  OG734_RS26040 (OG734_26090) - 6018298..6019314 (+) 1017 WP_330289905.1 hypothetical protein -
  OG734_RS26045 (OG734_26095) - 6019311..6019550 (+) 240 WP_330289906.1 hypothetical protein -
  OG734_RS26050 (OG734_26100) - 6019601..6020182 (+) 582 WP_330289907.1 Uma2 family endonuclease -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21817.19 Da        Isoelectric Point: 5.1616

>NTDB_id=646044 OG734_RS26015 WP_330289901.1 6015070..6015669(+) (recR) [Streptomyces sp. NBC_00576]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHTLLEVKAKVRFCATCGNVAQEELCNICRDPRRDTTV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=646044 OG734_RS26015 WP_330289901.1 6015070..6015669(+) (recR) [Streptomyces sp. NBC_00576]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGGCGGCTCCCCGGCGTCGGTCCCAAGAGCGCGCAACGGAT
CGCCTTCCACATCCTCCAGGCGGAGCCGACGGACGTACGGCGCCTCGCGCACACCCTTCTCGAAGTGAAGGCGAAAGTCC
GCTTCTGCGCGACCTGCGGGAACGTGGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGCCGGGACACGACGGTC
ATCTGCGTCGTCGAAGAGCCCAAGGACGTCGTGGCGATCGAGCGGACGCGTGAGTTCCGGGGCAAGTACCACGTCCTGGG
CGGTGCGATCAGCCCGATCGAGGGGGTGGGCCCGGACGACCTCCGCATAAGGGAACTCCTGGCCCGCCTGGCGGACGGCT
CGATCACGGAACTGATCCTGGCCACGGACCCGAACCTGGAGGGCGAGGCGACAGCGACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCTGTGGGTGGCGACCTGGAATACGCGGACGAGGTGACCCT
TGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.082

98.492

0.533
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462