Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG734_RS24680 Genome accession   NZ_CP107780
Coordinates   5709832..5710515 (-) Length   227 a.a.
NCBI ID   WP_330289668.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00576     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5704832..5715515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG734_RS24660 (OG734_24700) - 5705054..5705944 (+) 891 WP_330289664.1 ricin-type beta-trefoil lectin domain protein -
  OG734_RS24665 (OG734_24705) - 5706028..5707566 (-) 1539 WP_330289665.1 acyltransferase -
  OG734_RS24670 (OG734_24710) - 5707553..5708743 (-) 1191 WP_330289666.1 alpha/beta hydrolase -
  OG734_RS24675 (OG734_24715) - 5708897..5709685 (-) 789 WP_330289667.1 class I SAM-dependent methyltransferase -
  OG734_RS24680 (OG734_24720) vraR 5709832..5710515 (-) 684 WP_330289668.1 response regulator transcription factor Regulator
  OG734_RS24685 (OG734_24725) - 5710562..5710687 (-) 126 WP_330289669.1 hypothetical protein -
  OG734_RS24690 (OG734_24730) - 5711029..5714430 (+) 3402 WP_330289670.1 S8 family serine peptidase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24514.45 Da        Isoelectric Point: 7.4710

>NTDB_id=646039 OG734_RS24680 WP_330289668.1 5709832..5710515(-) (vraR) [Streptomyces sp. NBC_00576]
MAIRVVVVDDQDMVRSGFAALLSAQSDIDVVGEAPNGRLGVEVSRHTHPDVVLMDVRMPEMNGLEATRQLLDPPRGVVHR
PRVLMLTTFDIDDYIYEALHAGASGFLLKDAAVAELIQAVRVIAAGDALLAPSVTRRLIEDVTRRRPAAPRAARLRLNGL
TPRETEVLSLVARGLSNTEIAARLVVAEQTVKTHMTRLLAKLGARDRAQLVVLAYESGLIVPGASPA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=646039 OG734_RS24680 WP_330289668.1 5709832..5710515(-) (vraR) [Streptomyces sp. NBC_00576]
ATGGCAATTCGGGTGGTCGTCGTCGACGACCAGGACATGGTGCGCTCGGGATTCGCCGCGCTGCTGTCCGCGCAGAGCGA
CATCGACGTCGTGGGCGAGGCGCCCAACGGCCGGCTCGGTGTCGAGGTCAGCCGTCACACCCACCCCGACGTCGTACTGA
TGGACGTACGGATGCCCGAGATGAACGGACTGGAGGCCACCCGGCAACTGCTGGACCCGCCGCGCGGCGTCGTCCACCGG
CCCAGGGTGCTGATGCTGACCACCTTCGACATCGACGACTACATCTACGAGGCGCTGCACGCCGGTGCCAGCGGCTTCCT
GCTCAAGGACGCGGCGGTCGCCGAGCTCATCCAGGCGGTACGGGTGATCGCCGCCGGTGACGCACTGCTCGCACCCTCCG
TCACCCGGCGCCTCATCGAGGACGTGACCCGGCGCCGCCCTGCCGCGCCCCGGGCCGCCCGGCTGCGCCTGAACGGCCTC
ACGCCCCGGGAGACAGAGGTGCTGTCGCTGGTGGCACGGGGCCTGTCGAACACCGAGATCGCGGCGCGGCTGGTGGTGGC
CGAGCAGACCGTCAAGACCCACATGACCCGCCTGCTCGCCAAGCTCGGCGCCCGCGACCGGGCCCAACTCGTCGTCCTGG
CCTACGAGTCGGGGCTCATCGTGCCCGGGGCTTCGCCCGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(160-214)

Response regulator receiver domain (Response_reg)

(5-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.367

97.357

0.383
  degU Bacillus subtilis subsp. subtilis str. 168

36.123

100

0.361