Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG852_RS37270 Genome accession   NZ_CP107772
Coordinates   8242032..8242676 (+) Length   214 a.a.
NCBI ID   WP_133910396.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00582     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8237032..8247676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG852_RS37250 (OG852_37260) - 8237800..8238546 (-) 747 WP_330350224.1 transglycosylase SLT domain-containing protein -
  OG852_RS37255 (OG852_37265) - 8238846..8239961 (-) 1116 WP_330350225.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OG852_RS37260 (OG852_37270) - 8239958..8240656 (-) 699 WP_133910394.1 SDR family oxidoreductase -
  OG852_RS37265 (OG852_37275) - 8240894..8242039 (+) 1146 WP_330350226.1 GAF domain-containing sensor histidine kinase -
  OG852_RS37270 (OG852_37280) vraR 8242032..8242676 (+) 645 WP_133910396.1 response regulator transcription factor Regulator
  OG852_RS37275 (OG852_37285) - 8242783..8242953 (+) 171 Protein_7373 chaplin -
  OG852_RS37280 (OG852_37290) - 8242998..8243786 (-) 789 WP_330350227.1 hypothetical protein -
  OG852_RS37285 (OG852_37295) - 8243940..8244737 (+) 798 WP_133910398.1 ABC transporter ATP-binding protein -
  OG852_RS37290 (OG852_37300) - 8244799..8245233 (+) 435 WP_133910399.1 NfeD family protein -
  OG852_RS37295 (OG852_37305) - 8245384..8246334 (+) 951 WP_133910400.1 SPFH domain-containing protein -
  OG852_RS37300 (OG852_37310) - 8246456..8246962 (-) 507 WP_133910401.1 HNH endonuclease -
  OG852_RS37305 (OG852_37315) - 8247128..8247667 (-) 540 WP_330350228.1 YbhB/YbcL family Raf kinase inhibitor-like protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23060.27 Da        Isoelectric Point: 5.1517

>NTDB_id=645983 OG852_RS37270 WP_133910396.1 8242032..8242676(+) (vraR) [Streptomyces sp. NBC_00582]
MADAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVQRAEELQPDVVLMDVKMPGMDGVEALRRLRELDNPAR
VLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEETNSGHGRGGSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGAAGP

Nucleotide


Download         Length: 645 bp        

>NTDB_id=645983 OG852_RS37270 WP_133910396.1 8242032..8242676(+) (vraR) [Streptomyces sp. NBC_00582]
GTGGCTGACGCAATCAAGGTGCTGCTCGTCGACGACCACCAGGTCGTCCGCCGCGGACTGCGCACCTTCCTGGAGGTCCA
GGACGACATCGAGGTCGTCGGCGAGGCCGCCGACGGCGCGGAAGGAGTCCAGCGCGCCGAGGAACTGCAGCCCGACGTCG
TCCTGATGGACGTCAAGATGCCCGGCATGGACGGCGTGGAGGCCCTGCGCCGCCTGCGCGAACTCGACAACCCCGCGCGC
GTGCTCATCGTCACCAGCTTCACCGAACAGCGCACGGTGGTCCCGGCCCTGCGCGCCGGAGCCGCCGGATACGTCTACAA
GGACGTGGACCCCGACGCCCTCGCCGGTGCCATCCGCTCGGTCCACGCCGGTCACATCCTGCTCCAGCCCGAGGTCGCAG
GCGCCCTGCTCTCCCAGGAGGAGACCAACTCGGGGCACGGCAGAGGCGGTTCCCTCACCGAACGCGAGCGCGAGGTGCTC
GGCCTGATAGCGGACGGCCGCTCCAACCGCGAGATCGCCCGCGCCCTGGTCCTCTCCGAGAAGACGGTCAAGACCCACGT
CTCGAACATCCTGATGAAACTCGACCTCGCCGACCGCACCCAGGCCGCGCTGTGGGCCGTACGCCATGGAGCGGCCGGCC
CCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.19

98.131

0.453
  degU Bacillus subtilis subsp. subtilis str. 168

38.914

100

0.402