Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   STRIC_RS09980 Genome accession   NZ_AEUX02000007
Coordinates   442778..443491 (-) Length   237 a.a.
NCBI ID   WP_040832383.1    Uniprot ID   -
Organism   Streptococcus ictaluri 707-05     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 437778..448491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRIC_RS09965 (STRIC_2060) adhP 438890..439909 (+) 1020 WP_008089920.1 alcohol dehydrogenase AdhP -
  STRIC_RS09970 (STRIC_2061) - 440035..441342 (+) 1308 WP_040832382.1 MATE family efflux transporter -
  STRIC_RS09975 - 441429..442450 (-) 1022 Protein_414 IS30 family transposase -
  STRIC_RS09980 (STRIC_2064) treR 442778..443491 (-) 714 WP_040832383.1 trehalose operon repressor Regulator
  STRIC_RS09985 treP 443704..445731 (+) 2028 Protein_416 PTS system trehalose-specific EIIBC component -
  STRIC_RS09990 (STRIC_2067) treC 445803..447428 (+) 1626 WP_008089702.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27667.87 Da        Isoelectric Point: 9.2230

>NTDB_id=64598 STRIC_RS09980 WP_040832383.1 442778..443491(-) (treR) [Streptococcus ictaluri 707-05]
MKKYQAIYKDLEERISKDYYQEGDFLPTEMELATAYEASRNTVRKALSLLNKAGLITKKQGRGIQVIKHHQILFPISELT
SYQELVTYFNMDSKTNVIAIDKLIVDQKLSKLTGFSVNSLVWRITRQRVVEGVASVLDIDYLYKEKVPLMTREIAEHSIY
HYLEKDLHLAIDFALKEVTIDQVTDRDKILLDLGSDQHVVSVKSKVYLSNNDQFQFTESRHKLEKFKFLDFARRQPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=64598 STRIC_RS09980 WP_040832383.1 442778..443491(-) (treR) [Streptococcus ictaluri 707-05]
ATGAAAAAATACCAAGCCATTTATAAAGATTTGGAAGAAAGGATTAGCAAGGACTATTACCAAGAAGGTGATTTCCTTCC
CACCGAAATGGAGTTAGCCACAGCTTACGAGGCTAGCCGTAACACTGTCCGAAAGGCACTATCTCTGCTAAATAAAGCTG
GTTTAATAACAAAAAAACAAGGTCGGGGCATACAAGTCATTAAACATCATCAAATCCTATTTCCCATATCAGAATTGACC
AGCTACCAAGAATTAGTAACTTATTTTAATATGGATTCTAAAACCAATGTCATCGCCATTGACAAACTGATTGTTGATCA
AAAGCTCTCTAAACTAACAGGATTTAGCGTCAATAGTCTAGTTTGGCGAATCACAAGACAACGCGTAGTAGAAGGAGTTG
CTTCTGTTTTAGATATTGATTATCTCTATAAAGAAAAAGTTCCTCTGATGACCAGAGAGATTGCCGAACACTCCATCTAC
CATTATTTAGAAAAGGACTTGCATTTGGCTATTGATTTTGCCTTAAAAGAGGTTACTATTGACCAAGTGACTGATCGTGA
TAAAATCCTGCTAGATTTAGGTTCTGACCAACATGTGGTTTCAGTCAAATCAAAAGTTTACTTATCTAATAACGACCAAT
TCCAATTTACCGAAAGTCGTCATAAACTGGAAAAATTCAAATTCTTAGACTTTGCCAGACGCCAACCCAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(92-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

69.231

98.734

0.684

Multiple sequence alignment