Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG852_RS22785 Genome accession   NZ_CP107772
Coordinates   5132160..5132825 (-) Length   221 a.a.
NCBI ID   WP_133910809.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00582     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5127160..5137825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG852_RS22765 (OG852_22785) - 5127528..5128226 (-) 699 WP_330348815.1 leucine-rich repeat domain-containing protein -
  OG852_RS22770 (OG852_22790) - 5128336..5129676 (-) 1341 WP_133910806.1 DUF3500 domain-containing protein -
  OG852_RS22775 (OG852_22795) - 5129844..5131334 (-) 1491 WP_133910807.1 HAMP domain-containing sensor histidine kinase -
  OG852_RS22780 (OG852_22800) - 5131331..5132056 (-) 726 WP_133910808.1 response regulator transcription factor -
  OG852_RS22785 (OG852_22805) vraR 5132160..5132825 (-) 666 WP_133910809.1 response regulator transcription factor Regulator
  OG852_RS22790 (OG852_22810) - 5132822..5134165 (-) 1344 WP_133911267.1 histidine kinase -
  OG852_RS22795 (OG852_22815) - 5134295..5134972 (-) 678 WP_330348816.1 response regulator transcription factor -
  OG852_RS22800 (OG852_22820) - 5134969..5136420 (-) 1452 WP_330351482.1 sensor histidine kinase -
  OG852_RS22805 (OG852_22825) - 5136452..5137657 (-) 1206 WP_133910811.1 acyltransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23856.59 Da        Isoelectric Point: 4.8121

>NTDB_id=645959 OG852_RS22785 WP_133910809.1 5132160..5132825(-) (vraR) [Streptomyces sp. NBC_00582]
MTIRVLIADDQMMVREGFSVLLNAMPDIEVVGEAVNGRQAVDRVRELSPDVVLMDIRMPELNGIEATREIVAADGTAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTRRLITEFSKLSNTPVLPRAAQAAYGDLTD
RETEVLVLIAQGLSNVEIAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=645959 OG852_RS22785 WP_133910809.1 5132160..5132825(-) (vraR) [Streptomyces sp. NBC_00582]
ATGACGATCCGTGTGCTGATAGCCGACGACCAGATGATGGTGCGCGAGGGCTTCTCGGTCCTGCTGAACGCGATGCCGGA
CATCGAGGTCGTGGGCGAGGCGGTCAACGGCCGTCAGGCGGTGGACCGGGTCCGTGAGCTGTCCCCCGACGTCGTCCTGA
TGGACATCCGGATGCCCGAGCTGAACGGCATCGAGGCGACCCGGGAGATCGTGGCGGCGGACGGTACGGCGAAGGTCCTG
GTACTGACCACCTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGGGCGGGAGCCTCCGGCTTCCTCCTCAAGGACGC
CTCGGCCCGCCAGCTCGCGGACGGGGTCCGGGTGGTGGCGGCCGGGGAGGCCCTGCTCGCCCCGTCCGTCACCCGGCGCC
TGATCACCGAGTTCTCCAAGCTCTCGAACACCCCCGTCCTGCCCCGCGCCGCCCAGGCCGCCTACGGCGACCTCACCGAC
CGGGAGACGGAGGTCCTGGTCCTGATCGCACAGGGCCTGTCGAACGTCGAGATAGCCGGCCGGCTGGTGGTCGCGGAGTC
CACGATCAAGACCCATGTGAGCAGGATCCTGGTCAAACTGGGGCTGCGGGACCGGACCCAGGCGGCGGTGTTCGCGTACG
AGGCGAGACTGGTGACGCCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.037

98.643

0.434
  degU Bacillus subtilis subsp. subtilis str. 168

41.475

98.19

0.407