Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG852_RS22630 Genome accession   NZ_CP107772
Coordinates   5099425..5100024 (-) Length   199 a.a.
NCBI ID   WP_133910782.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00582     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5094425..5105024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG852_RS22605 (OG852_22625) - 5095797..5096465 (+) 669 WP_133910777.1 response regulator transcription factor -
  OG852_RS22610 (OG852_22630) - 5096462..5097820 (+) 1359 WP_330348799.1 HAMP domain-containing sensor histidine kinase -
  OG852_RS22615 (OG852_22635) - 5097836..5098342 (-) 507 WP_330348800.1 SgcJ/EcaC family oxidoreductase -
  OG852_RS22620 (OG852_22640) - 5098451..5098633 (-) 183 WP_133910780.1 hypothetical protein -
  OG852_RS22625 (OG852_22645) - 5098770..5099432 (-) 663 WP_133910781.1 DUF5063 domain-containing protein -
  OG852_RS22630 (OG852_22650) recR 5099425..5100024 (-) 600 WP_133910782.1 recombination mediator RecR Machinery gene
  OG852_RS22635 (OG852_22655) - 5100085..5100429 (-) 345 WP_055633067.1 YbaB/EbfC family nucleoid-associated protein -
  OG852_RS22640 (OG852_22660) - 5100661..5101407 (+) 747 WP_133910783.1 SLATT domain-containing protein -
  OG852_RS22645 (OG852_22665) - 5101484..5103316 (-) 1833 WP_330348801.1 serine/threonine-protein kinase -
  OG852_RS22650 (OG852_22670) - 5103395..5103853 (-) 459 WP_133910785.1 helix-turn-helix domain-containing protein -
  OG852_RS22655 (OG852_22675) - 5103850..5104458 (-) 609 WP_330348802.1 type 1 glutamine amidotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21737.12 Da        Isoelectric Point: 4.9909

>NTDB_id=645957 OG852_RS22630 WP_133910782.1 5099425..5100024(-) (recR) [Streptomyces sp. NBC_00582]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNVAQEELCGICRDARRDPTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=645957 OG852_RS22630 WP_133910782.1 5099425..5100024(-) (recR) [Streptomyces sp. NBC_00582]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAACCGACGGACGTACGGCGGCTCGCGCAGGCCCTCATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGGAACGTGGCGCAGGAGGAGCTGTGCGGCATCTGCCGCGACGCCCGCCGCGATCCGACGGTC
ATCTGCGTCGTGGAGGAGCCCAAGGACGTGGTGGCGATCGAGCGGACCCGTGAGTTCCGGGGCCGGTACCACGTCCTGGG
CGGAGCGATCAGCCCGATCGAGGGCGTCGGCCCCGACGATCTGCGCATCAGGGAACTGCTGGCCCGTCTCGCGGACGGCA
CGGTCACGGAACTGATCCTCGCCACCGACCCCAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457