Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG852_RS21060 Genome accession   NZ_CP107772
Coordinates   4753774..4755183 (+) Length   469 a.a.
NCBI ID   WP_133910494.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00582     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4748774..4760183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG852_RS21040 (OG852_21055) - 4748984..4749808 (-) 825 WP_133910490.1 sugar phosphate isomerase/epimerase -
  OG852_RS21045 (OG852_21060) - 4749935..4750867 (-) 933 WP_330348671.1 Ppx/GppA phosphatase family protein -
  OG852_RS21050 (OG852_21065) - 4750939..4751763 (+) 825 WP_133910492.1 hypothetical protein -
  OG852_RS21055 (OG852_21070) - 4751769..4753514 (-) 1746 WP_133910493.1 sigma-70 family RNA polymerase sigma factor -
  OG852_RS21060 (OG852_21075) radA/sms 4753774..4755183 (+) 1410 WP_133910494.1 DNA repair protein RadA Machinery gene
  OG852_RS21065 (OG852_21080) disA 4755265..4756389 (+) 1125 WP_133910495.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG852_RS21070 (OG852_21085) - 4756406..4757239 (-) 834 WP_330348672.1 hypothetical protein -
  OG852_RS21075 (OG852_21090) - 4757504..4758427 (+) 924 WP_133910496.1 A/G-specific adenine glycosylase -
  OG852_RS21080 (OG852_21095) - 4758731..4759273 (+) 543 WP_067256344.1 SigE family RNA polymerase sigma factor -
  OG852_RS21085 (OG852_21100) - 4759258..4759944 (+) 687 WP_133910497.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49680.80 Da        Isoelectric Point: 7.7380

>NTDB_id=645951 OG852_RS21060 WP_133910494.1 4753774..4755183(+) (radA/sms) [Streptomyces sp. NBC_00582]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTIEEYGAPAVRTTAPGRVTTSAVPIGQVDGRQATARTTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLASVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKDRGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKIPAGMKVLEVADMGDALRVLPRSRRREAPREAEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=645951 OG852_RS21060 WP_133910494.1 4753774..4755183(+) (radA/sms) [Streptomyces sp. NBC_00582]
ATGGCTGCCCGTACCAAGACCACCAAGGACCGCCCGTCCTACCGCTGCACCGAATGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGCACGATCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGGCGCCGGGGC
GCGTCACCACCTCCGCCGTGCCGATCGGCCAGGTCGACGGCCGGCAGGCGACCGCCCGCACGACCGGCGTGCCCGAGCTC
GACCGCGTCCTCGGCGGCGGTCTGGTGCCCGGCGCGGTGGTGCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGTCGACGCT
GCTGCTGGACGTGGCGGCCAAGTCGGCGAGTGACGAACACCGCACCCTCTATGTGACGGGTGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGCGCCGACCGGATCGGCGCCATCGACGACCATCTCTATCTGGCGGCCGAGACCGATCTGGCCTCCGTCCTC
GGCCACTTGGACGCGGTGAAGCCGTCGCTGCTGATCCTCGACTCGGTGCAGACGGTGGCCTCCCCCGAGATCGACGGGGC
GCCGGGCGGTATGGCGCAGGTCCGCGAGGTCGCCGGGGCCCTGATCCGCGCCTCCAAGGACCGCGGCATGTCCACGCTGC
TGGTGGGCCATGTCACGAAGGACGGGGCGATCGCCGGACCGCGCCTGCTGGAGCACCTGGTGGACGTCGTCCTGCACTTC
GAGGGCGACCGGCACGCGCGCCTGCGTCTGGTGCGCGGGGTGAAGAACCGCTACGGCGCCACCGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACGGGCCTGGCCGACCCGAGCGGACTTTTCCTGACCAGACGTGACGAACCGGTCCCTG
GGACCTGTCTGACCGTCACCCTGGAGGGGCGTCGGCCCCTGGTCGCCGAGGTCCAGGCGCTCACCGTAGACTCACAGATC
CCCTCGCCCCGGCGCACCACCTCCGGCCTGGAGACGTCCCGGGTCTCGATGATGCTGGCCGTCCTGGAACAGCGCGGCCG
CATCAGCGCGCTCGGCAAGCGGGACATCTACTCGGCGACGGTCGGCGGTGTGAAGCTCTCCGAGCCCGCTGCGGACCTGG
CGATCGCCCTGGCCCTTGCCTCCGCGGCCAGTGACACCCCCCTGCCCAAGAACCTGGTCGCGATCGGCGAAGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCAGGCTGGCCGAGGCCCACCGGCTGGGCTTCACGCACGCGCTCGT
ACCGGGCGATCCCGGCAAGATCCCGGCCGGCATGAAGGTCCTCGAAGTCGCGGACATGGGGGACGCGCTGCGGGTCCTGC
CGAGGTCCCGTCGCCGAGAGGCCCCACGGGAGGCGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.142

96.375

0.416
  radA Streptococcus pneumoniae D39

43.207

95.736

0.414
  radA Streptococcus pneumoniae R6

43.207

95.736

0.414
  radA Streptococcus pneumoniae Rx1

43.207

95.736

0.414
  radA Streptococcus pneumoniae TIGR4

43.207

95.736

0.414
  radA Streptococcus mitis SK321

44.706

90.618

0.405
  radA Streptococcus mitis NCTC 12261

44.706

90.618

0.405