Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG852_RS14135 Genome accession   NZ_CP107772
Coordinates   3283940..3284719 (+) Length   259 a.a.
NCBI ID   WP_055635752.1    Uniprot ID   A0ABV9ISE9
Organism   Streptomyces sp. NBC_00582     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3278940..3289719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG852_RS14120 (OG852_14130) - 3279090..3279620 (+) 531 WP_330348102.1 TerD family protein -
  OG852_RS14125 (OG852_14135) - 3279714..3282617 (-) 2904 WP_330348103.1 vitamin B12-dependent ribonucleotide reductase -
  OG852_RS14130 (OG852_14140) nrdR 3282783..3283352 (-) 570 WP_133914018.1 transcriptional regulator NrdR -
  OG852_RS14135 (OG852_14145) dinR/lexA 3283940..3284719 (+) 780 WP_055635752.1 transcriptional repressor LexA Regulator
  OG852_RS14140 (OG852_14150) - 3284882..3286858 (-) 1977 WP_330348104.1 ATP-dependent DNA helicase -
  OG852_RS14145 (OG852_14155) - 3287109..3287723 (-) 615 WP_133914016.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28031.80 Da        Isoelectric Point: 7.0666

>NTDB_id=645934 OG852_RS14135 WP_055635752.1 3283940..3284719(+) (dinR/lexA) [Streptomyces sp. NBC_00582]
MTTTADSATITAQDRSQGRLEPVHAMNEAVNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAVSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=645934 OG852_RS14135 WP_055635752.1 3283940..3284719(+) (dinR/lexA) [Streptomyces sp. NBC_00582]
GTGACCACCACCGCAGACAGCGCCACCATCACCGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCGTGAACCCGGAGGGGCACAAGCGCTCCCTGCCGGGCCGACCTCCAGGCATCCGGGCGGACAGCTCGGGCCTGA
CCGACCGGCAGCGCCGGGTGATCGAGGTCATCCGGGACTCCGTACAGCGGCGCGGCTACCCGCCGTCCATGCGGGAGATC
GGCCAGGCCGTCGGCCTGTCCAGCACATCCTCGGTGGCGCACCAGTTGATGGCGCTGGAGCGCAAGGGCTTCCTGCGCCG
TGACCCGCACCGCCCGCGCGCGTACGAGGTCCGCGGCTCCGACCAGGCCGTCTCCGTGCAGCCCACGGACACCGCCGGCA
AGCCCGCCGCGTCGTACGTCCCGCTGGTGGGCCGGATCGCCGCAGGTGGCCCGATCCTCGCCGAGGAGTCCGTCGAGGAC
GTCTTCCCGCTCCCGAGGCAGCTCGTGGGCGACGGTGAGCTGTTCGTGCTGAAGGTCGTCGGCGACTCGATGATCGAAGC
GGCGATCTGCGACGGCGACTGGGTCACCGTCCGCCGTCAGCCCGTCGCCGAGAACGGCGACATCGTGGCGGCCATGCTCG
ACGGCGAGGCCACCGTGAAGAGGTTCAAGCGCGAGGACGGCCATGTGTGGCTGCTCCCGCACAACGCGGCGTACGAGCCG
ATCCCCGGCGACGACGCGACGATCCTCGGCAAGGTGGTGGCGGTCCTCCGCCGCGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.445

81.467

0.378