Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG852_RS02530 Genome accession   NZ_CP107772
Coordinates   548644..549291 (-) Length   215 a.a.
NCBI ID   WP_133916588.1    Uniprot ID   A0ABV2XS44
Organism   Streptomyces sp. NBC_00582     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 543644..554291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG852_RS02500 (OG852_02495) - 544335..544817 (+) 483 WP_133916590.1 site-specific integrase -
  OG852_RS02505 (OG852_02500) - 544781..545159 (-) 379 Protein_500 MMPL family transporter -
  OG852_RS02510 (OG852_02505) - 545328..545507 (-) 180 Protein_501 helix-turn-helix domain-containing protein -
  OG852_RS02515 (OG852_02510) - 545736..546377 (-) 642 WP_133916589.1 NAD(P)H-dependent oxidoreductase -
  OG852_RS02520 (OG852_02515) - 547022..547459 (+) 438 WP_330346922.1 MarR family transcriptional regulator -
  OG852_RS02525 (OG852_02520) - 547748..548254 (-) 507 Protein_504 transposase family protein -
  OG852_RS02530 (OG852_02525) vraR 548644..549291 (-) 648 WP_133916588.1 response regulator transcription factor Regulator
  OG852_RS02535 (OG852_02530) - 549288..550511 (-) 1224 WP_133916587.1 sensor histidine kinase -
  OG852_RS02540 (OG852_02535) lgt 550690..551520 (+) 831 WP_133916586.1 prolipoprotein diacylglyceryl transferase -
  OG852_RS02545 (OG852_02540) - 551585..552007 (+) 423 WP_133916585.1 DUF6069 family protein -
  OG852_RS02550 (OG852_02545) - 551982..552398 (-) 417 WP_133916584.1 TetR family transcriptional regulator -
  OG852_RS02555 (OG852_02550) - 552703..553218 (+) 516 WP_133916583.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 22390.71 Da        Isoelectric Point: 7.4754

>NTDB_id=645918 OG852_RS02530 WP_133916588.1 548644..549291(-) (vraR) [Streptomyces sp. NBC_00582]
MRTSAGPTIRVLLADDHPVVRDGLAAMLSTQPDLTVVGEAATGAEALRQTASLAPDVVLMDLQMPGMDGTTATAAIRAAH
PEVRVLVLTTYDTDADITAAVDAGAVGYLLKDTGRHELCEAVRTAARGGAALSPTVAAKVLAHMRGDRGAGLSGRELEVL
SAVARGQSNKQIARALRLSEATVKTHLLHIYAKLDVRDRTAAVTAALGRGIIRMD

Nucleotide


Download         Length: 648 bp        

>NTDB_id=645918 OG852_RS02530 WP_133916588.1 548644..549291(-) (vraR) [Streptomyces sp. NBC_00582]
ATGAGGACGTCGGCCGGTCCCACGATCCGAGTCCTCCTCGCCGACGACCACCCCGTGGTCCGTGACGGGCTTGCCGCCAT
GCTCTCCACCCAGCCCGATCTCACGGTCGTCGGCGAAGCCGCCACCGGCGCCGAGGCACTGCGCCAGACCGCCTCTCTCG
CACCCGACGTCGTGCTGATGGACCTGCAGATGCCCGGCATGGACGGCACGACCGCGACCGCCGCCATTCGTGCCGCCCAC
CCCGAGGTGCGGGTACTCGTCCTGACCACCTACGACACGGACGCCGACATCACTGCCGCCGTCGACGCCGGCGCAGTCGG
CTACCTGCTCAAGGACACCGGACGACACGAGCTCTGCGAGGCCGTTCGGACCGCGGCTCGCGGAGGCGCGGCATTGTCGC
CCACCGTGGCCGCCAAGGTCCTCGCCCATATGCGCGGCGACCGGGGCGCCGGCTTGTCCGGCAGGGAGCTCGAAGTCCTG
TCCGCCGTGGCCCGGGGGCAGAGCAACAAACAGATCGCCCGCGCCCTGCGCCTGTCGGAGGCCACCGTCAAGACCCATCT
GCTGCACATCTACGCCAAGCTCGACGTCCGCGACCGGACCGCCGCCGTCACCGCCGCACTGGGCAGGGGAATCATCCGCA
TGGACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-205)

Response regulator receiver domain (Response_reg)

(11-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.788

96.744

0.414
  degU Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.372