Detailed information NTG0064590

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: STRIC_RS09155
• Genome accession: NZ_AEUX02000007
• Coordinates: 288992..289924 (+)
• Length: 310 a.a.
• NCBI ID: WP_008090050.1
• Uniprot ID: G5K4Z3
• Organism: Streptococcus ictaluri 707-05
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 283992..294924

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STRIC_RS09135 (STRIC_1876)	-	284176..285834 (+)	1659	WP_008090345.1	peptide ABC transporter substrate-binding protein	-
STRIC_RS09140 (STRIC_1877)	-	285979..286893 (+)	915	WP_008090077.1	ABC transporter permease	-
STRIC_RS09145 (STRIC_1878)	-	286903..287934 (+)	1032	WP_008090116.1	ABC transporter permease	-
STRIC_RS09150 (STRIC_1879)	oppD	287946..288992 (+)	1047	WP_008090184.1	ABC transporter ATP-binding protein	Regulator
STRIC_RS09155 (STRIC_1880)	amiF	288992..289924 (+)	933	WP_008090050.1	ABC transporter ATP-binding protein	Regulator
STRIC_RS09160 (STRIC_1881)	rnjA	290018..291697 (-)	1680	WP_008090114.1	ribonuclease J1	-
STRIC_RS09165 (STRIC_1882)	-	291699..291929 (-)	231	WP_008090337.1	DNA-dependent RNA polymerase subunit epsilon	-
STRIC_RS09170 (STRIC_1883)	tsaB	292287..292985 (+)	699	WP_008090405.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
STRIC_RS09175 (STRIC_1884)	rimI	292988..293413 (+)	426	WP_008089645.1	ribosomal protein S18-alanine N-acetyltransferase	-
STRIC_RS09180 (STRIC_1885)	tsaD	293403..294422 (+)	1020	WP_008089765.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
STRIC_RS09185 (STRIC_1886)	rpsN	294608..294877 (-)	270	WP_008090095.1	30S ribosomal protein S14	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35047.12 Da
• Isoelectric Point: 7.2012

>NTDB_id=64590 STRIC_RS09155 WP_008090050.1 288992..289924(+) (amiF) [Streptococcus ictaluri 707-05]
MVETRKKLVELKNVSLTFNKGKKNQVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGEIIFNGDKVSHL
KGKELHQFRKNAQMIFQDPQASLNGRMKIKDIVAEGLDIHKLTSSKEEREERVQELLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQHKHGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEIGTADQ
VYHNPIHPYTKSLLSAIPEPDPVKERQRVAEVYDPSQELDGQERHMHEISPGHFVLATEAEAQAYRAEQL

Nucleotide

• Length: 933 bp

>NTDB_id=64590 STRIC_RS09155 WP_008090050.1 288992..289924(+) (amiF) [Streptococcus ictaluri 707-05]
ATGGTAGAAACACGTAAAAAATTAGTAGAGCTAAAAAATGTCTCCCTAACCTTTAATAAAGGCAAAAAAAATCAAGTTAA
GGCTATTGATAATGTCAGTTTTGACATCTATGAAGGAGAAGTCTTTGGACTGGTTGGTGAATCGGGTTCTGGAAAAACAA
CGGTAGGCCGTGCCATTCTTAAATTATATGATATCAATGAGGGTGAGATTATCTTCAATGGTGACAAAGTCTCACATCTT
AAAGGCAAAGAGCTTCATCAATTTCGGAAAAATGCCCAAATGATTTTCCAAGATCCTCAGGCCAGCTTGAATGGTCGTAT
GAAGATTAAAGATATTGTGGCAGAAGGATTGGATATTCACAAGTTAACCAGTTCTAAAGAAGAACGCGAAGAACGTGTTC
AAGAGCTGTTAGATTTAGTTGGGTTAAATAAAGATCACCTTACTCGTTACCCTCATGAGTTCTCTGGGGGGCAACGTCAG
CGGATTGGTATTGCCAGAGCTTTGGCGGTTAAACCTAAATTTATCATTGCTGATGAACCGATCTCAGCACTAGATGTGTC
CATTCAGGCTCAGGTAGTTAACTTGATGCAAAAATTGCAACACAAACATGGCTTAACCTATCTCTTTATTGCCCATGACC
TTTCCATGGTCAAATACATTTCAGATCGTATTGGGGTTATGCACTGGGGCAAACTGCTAGAGATTGGAACAGCAGATCAA
GTCTATCATAACCCTATCCATCCTTATACCAAGAGTCTCTTATCGGCTATCCCAGAGCCTGATCCTGTGAAGGAACGTCA
ACGGGTAGCAGAAGTCTATGATCCTAGTCAAGAGCTCGATGGTCAGGAACGTCACATGCATGAAATCAGTCCTGGACACT
TTGTTTTAGCAACAGAAGCTGAAGCACAGGCTTACAGAGCTGAGCAACTCTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-271)

3D structure

• AlphaFold DB: G5K4Z3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	55.229	98.71	0.545
amiF	Streptococcus thermophilus LMG 18311	54.902	98.71	0.542
amiF	Streptococcus salivarius strain HSISS4	54.902	98.71	0.542