Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHN38_RS24990 Genome accession   NZ_CP107765
Coordinates   5397683..5398357 (+) Length   224 a.a.
NCBI ID   WP_242708768.1    Uniprot ID   A0ABS9XBP3
Organism   Streptomyces sp. NBC_00588     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5392683..5403357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN38_RS24975 (OHN38_24960) - 5394786..5395673 (-) 888 WP_330283281.1 NAD(P)H-binding protein -
  OHN38_RS24980 (OHN38_24965) - 5395770..5396336 (+) 567 WP_242708770.1 TetR/AcrR family transcriptional regulator -
  OHN38_RS24985 (OHN38_24970) - 5396433..5397686 (+) 1254 WP_242708769.1 histidine kinase -
  OHN38_RS24990 (OHN38_24975) vraR 5397683..5398357 (+) 675 WP_242708768.1 response regulator transcription factor Regulator
  OHN38_RS24995 (OHN38_24980) - 5398499..5399335 (+) 837 WP_330283282.1 ABC transporter ATP-binding protein -
  OHN38_RS25000 (OHN38_24985) - 5399332..5401878 (+) 2547 WP_330283283.1 FtsX-like permease family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24108.80 Da        Isoelectric Point: 6.7393

>NTDB_id=645882 OHN38_RS24990 WP_242708768.1 5397683..5398357(+) (vraR) [Streptomyces sp. NBC_00588]
MTTRVIIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGAQGVELSRRTHPDVVLMDVRMPEMDGLEAARRLLAPPPGVTHR
PRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAKQRPAARSRPAQRLKGL
TERETEVLTLVARGQSNGEIARTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESGLVAPGE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=645882 OHN38_RS24990 WP_242708768.1 5397683..5398357(+) (vraR) [Streptomyces sp. NBC_00588]
GTGACGACACGCGTCATCATCGTCGACGACCAGGCCATGGTGCGGGCCGGCTTCGCCGCGCTGCTGGCCGCCCAGAGCGA
CATCGACGTGGTGGGCGAGGCCCCGGACGGCGCGCAGGGCGTCGAGTTGAGCCGGCGTACGCATCCCGACGTCGTACTGA
TGGACGTACGGATGCCCGAGATGGACGGCCTGGAGGCCGCACGCCGGCTGCTCGCACCGCCGCCGGGGGTGACCCACCGG
CCGCGCGTGCTGATGCTGACCACGTTCGACGTCGACGACTACGTGTACGAGGCGCTGCGCGCGGGCGCGAGCGGGTTCCT
GCTGAAGGACGCGCCGCCCGCCGACCTCATCGCGGCCGTCCGCGTCGTGGCCGCGGGCGACGCCCTGCTCGCCCCCTCCG
TGACGCGCCGCCTGATCGCGGACTTCGCCAAGCAGCGCCCCGCGGCCCGGAGCAGGCCCGCACAGCGGCTCAAGGGCCTG
ACGGAACGCGAGACCGAGGTCCTCACCCTGGTCGCCCGCGGCCAGTCGAACGGGGAGATCGCCCGCACGCTGGTGCTCGC
CGAGCAGACGGTGAAGACCCACGTGAGCCGCGTCCTGACCAAACTCGACCTCCGCGACCGCGCCCAGGCGGTGGTGTTCG
CGTACGAGTCGGGGCTGGTGGCGCCGGGGGAGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.909

98.214

0.402
  degU Bacillus subtilis subsp. subtilis str. 168

38.496

100

0.388