Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHN38_RS21475 Genome accession   NZ_CP107765
Coordinates   4660249..4660848 (+) Length   199 a.a.
NCBI ID   WP_016437272.1    Uniprot ID   A0ABS9XEJ4
Organism   Streptomyces sp. NBC_00588     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4655249..4665848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN38_RS21455 (OHN38_21440) - 4655769..4657316 (+) 1548 WP_330282989.1 substrate-binding domain-containing protein -
  OHN38_RS21460 (OHN38_21445) - 4657578..4658816 (+) 1239 WP_330282990.1 M20/M25/M40 family metallo-hydrolase -
  OHN38_RS21465 (OHN38_21450) - 4658840..4659589 (-) 750 WP_242709514.1 SLATT domain-containing protein -
  OHN38_RS21470 (OHN38_21455) - 4659845..4660189 (+) 345 WP_016437271.1 YbaB/EbfC family nucleoid-associated protein -
  OHN38_RS21475 (OHN38_21460) recR 4660249..4660848 (+) 600 WP_016437272.1 recombination mediator RecR Machinery gene
  OHN38_RS21480 (OHN38_21465) - 4660841..4661500 (+) 660 WP_242709513.1 DUF5063 domain-containing protein -
  OHN38_RS21485 (OHN38_21470) - 4661513..4662151 (-) 639 WP_242709512.1 response regulator -
  OHN38_RS21490 (OHN38_21475) - 4662252..4662971 (-) 720 WP_330282991.1 sulfite exporter TauE/SafE family protein -
  OHN38_RS21495 (OHN38_21480) - 4663242..4664534 (+) 1293 WP_016437275.1 aspartate kinase -
  OHN38_RS21500 (OHN38_21485) - 4664560..4665618 (+) 1059 WP_308404294.1 aspartate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21780.14 Da        Isoelectric Point: 4.9909

>NTDB_id=645871 OHN38_RS21475 WP_016437272.1 4660249..4660848(+) (recR) [Streptomyces sp. NBC_00588]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNVAQEELCNICRDSRRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=645871 OHN38_RS21475 WP_016437272.1 4660249..4660848(+) (recR) [Streptomyces sp. NBC_00588]
TTGTACGAAGGCGTGGTGCAGGACCTCATCGACGAACTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCCCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAACCGACGGACGTACGGCGGCTCGCGCAGGCCCTGATGGAGGTCAAGGCCAAGGTCA
GGTTCTGCGCGACCTGCGGCAACGTCGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACTCGCGCCGCGACCCCGCCGTC
ATCTGTGTGGTGGAGGAGCCCAAGGACGTGGTCGCCATCGAGCGCACCCGTGAGTTCCGGGGCCGCTACCACGTCCTGGG
CGGAGCGATCAGCCCGATCGAGGGTGTCGGACCCGACGACCTGCGTATACGGGAACTTCTCGCGCGGTTGGCCGACGGTA
CGGTCACGGAACTGATCCTGGCCACGGACCCGAATCTGGAGGGCGAGGCCACCGCGACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452