Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHN38_RS21310 Genome accession   NZ_CP107765
Coordinates   4628563..4629228 (+) Length   221 a.a.
NCBI ID   WP_330282968.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00588     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4623563..4634228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN38_RS21290 (OHN38_21275) - 4623955..4624785 (+) 831 WP_330282966.1 tryptophan 2,3-dioxygenase family protein -
  OHN38_RS21295 (OHN38_21280) kynU 4624778..4626001 (+) 1224 WP_330282967.1 kynureninase -
  OHN38_RS21300 (OHN38_21285) - 4626191..4627075 (+) 885 WP_016437238.1 alpha/beta hydrolase -
  OHN38_RS21305 (OHN38_21290) - 4627172..4628566 (+) 1395 WP_037783395.1 histidine kinase -
  OHN38_RS21310 (OHN38_21295) vraR 4628563..4629228 (+) 666 WP_330282968.1 response regulator transcription factor Regulator
  OHN38_RS21315 (OHN38_21300) - 4629248..4630468 (+) 1221 WP_330282969.1 cytochrome P450 -
  OHN38_RS21320 (OHN38_21305) - 4630555..4631157 (+) 603 WP_330282970.1 Uma2 family endonuclease -
  OHN38_RS21325 (OHN38_21310) - 4631167..4632771 (-) 1605 WP_330282971.1 ABC transporter permease -
  OHN38_RS21330 (OHN38_21315) - 4632768..4633682 (-) 915 WP_330282972.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23886.63 Da        Isoelectric Point: 4.6475

>NTDB_id=645870 OHN38_RS21310 WP_330282968.1 4628563..4629228(+) (vraR) [Streptomyces sp. NBC_00588]
MTIRVLIADDQMMVREGFSVLLNAMPDIEVVGEAVNGRQAIDRVCELAPDVVLMDIRMPELNGIEATREIVAADTTAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPTVTKRLITEFSKLAEAPRHLASAQAAYGDLTE
RETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=645870 OHN38_RS21310 WP_330282968.1 4628563..4629228(+) (vraR) [Streptomyces sp. NBC_00588]
ATGACCATCCGCGTCCTGATCGCGGACGATCAGATGATGGTGCGTGAGGGCTTCTCCGTCCTGCTGAACGCGATGCCGGA
CATCGAGGTCGTCGGCGAGGCGGTCAACGGCCGCCAGGCGATCGACCGGGTCTGCGAACTCGCCCCCGACGTCGTCCTGA
TGGACATCCGCATGCCCGAGCTGAACGGCATCGAGGCGACGAGGGAGATCGTCGCCGCCGACACCACGGCCAAGGTCCTC
GTCCTGACCACCTTCGACCTCGACGAGTACGTGTACCAGGCCCTGCGCGCGGGCGCCTCCGGCTTCCTGCTCAAGGACGC
CTCCGCGCGCCAACTGGCCGACGGCGTACGGGTGGTGGCCGCGGGCGAGGCGCTCCTCGCGCCGACCGTGACGAAGCGGC
TGATCACGGAGTTCTCGAAGCTGGCGGAGGCGCCACGCCACCTGGCATCCGCCCAGGCGGCCTACGGCGACCTGACCGAA
CGCGAGACCGAGGTCCTCGTCCTCATCGCCCAGGGCCTGTCCAACGCCGAGATCGCCGAGCGCCTGGTCGTCGCCGAGTC
GACGATCAAGACCCACGTCAGCCGCATCCTGGTGAAGCTGGGCCTGCGGGACCGCACCCAGGCGGCGGTGTTCGCGTACG
AGGCGAGGCTGGTCACGCCGGGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.954

98.643

0.443
  degU Bacillus subtilis subsp. subtilis str. 168

42.396

98.19

0.416