Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   L1A16_RS07250 Genome accession   NZ_CP090885
Coordinates   1431202..1432434 (-) Length   410 a.a.
NCBI ID   WP_000106346.1    Uniprot ID   A0A064C077
Organism   Streptococcus pneumoniae strain ND6401     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1426202..1437434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A16_RS07220 (L1A16_07220) - 1426389..1427357 (+) 969 WP_000080999.1 NAD(P)/FAD-dependent oxidoreductase -
  L1A16_RS07225 (L1A16_07225) whiA 1427391..1428302 (-) 912 WP_000011306.1 DNA-binding protein WhiA -
  L1A16_RS07230 (L1A16_07230) - 1428299..1429276 (-) 978 WP_001231069.1 YvcK family protein -
  L1A16_RS07235 (L1A16_07235) rapZ 1429273..1430163 (-) 891 WP_000163029.1 RNase adapter RapZ -
  L1A16_RS07240 (L1A16_07240) - 1430215..1430595 (-) 381 WP_001140412.1 RidA family protein -
  L1A16_RS07245 (L1A16_07245) yihA 1430606..1431193 (-) 588 WP_000422599.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  L1A16_RS07250 (L1A16_07250) clpX 1431202..1432434 (-) 1233 WP_000106346.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  L1A16_RS07255 (L1A16_07255) - 1432466..1432636 (-) 171 WP_000442275.1 hypothetical protein -
  L1A16_RS07260 (L1A16_07260) - 1432636..1433142 (-) 507 WP_000162482.1 dihydrofolate reductase -
  L1A16_RS07265 (L1A16_07265) - 1433272..1433790 (-) 519 WP_000229874.1 Dps family protein -
  L1A16_RS07270 (L1A16_07270) - 1434286..1435608 (-) 1323 Protein_1455 GH25 family lysozyme -
  L1A16_RS07275 (L1A16_07275) tpiA 1435646..1436404 (-) 759 WP_000087896.1 triose-phosphate isomerase -
  L1A16_RS07280 (L1A16_07280) - 1436501..1437178 (-) 678 WP_000221614.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45798.35 Da        Isoelectric Point: 4.4550

>NTDB_id=645836 L1A16_RS07250 WP_000106346.1 1431202..1432434(-) (clpX) [Streptococcus pneumoniae strain ND6401]
MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=645836 L1A16_RS07250 WP_000106346.1 1431202..1432434(-) (clpX) [Streptococcus pneumoniae strain ND6401]
ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAAGAAGAAGTACAAAAAATAAT
TGCTGGCAACAATGCTTTTATTTGTAATGAATGCGTGGAGTTAGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATTGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCGGTTTATAACCACTACAAACGCATCAATTTCCACGATACACGCGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATTTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTACCTTTTGCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGATGTGGAAAAT
ATACTCCTCAAACTCTTGCAGGTTGCTGACTTTAACATCGAACGTGCAGAGCGTGGCATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGTGAGAATGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATTGAGGGAACTGTTGCTAGCGTACCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAACAATAAGGCGATTGACGAAAACAGCTCATACATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACCGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGATGATGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCAATCGAACGGAAGACAGGGGCGCGTGGACTTCGCTCCATCATCGAAG
AAACCATGCTAGATGTTATGTTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTCGAT
GGAACGGATAAACCGATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A064C077

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.585

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.214

98.049

0.561